RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CLDN7O95471 211 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 BCHEP06276 602 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 NMBP08949 121 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 UCHL1P09936 223 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF14P17017 642 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF37AP17032 561 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 AZU1P20160 251 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 TAC1P20366 129 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ADORA2BP29275 332 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ARL2P36404 184 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 GAS1P54826 345 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 RHOAP61586 193 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZXDAP98168 799 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 CEACAM7Q14002 265 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 CRMP1Q14194 572 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 HERPUD1Q15011 391 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 TSNQ15631 228 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF77Q15935 545 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ST3GAL2Q16842 350 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 CBWD3Q5JTY5 395 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 AWAT2Q6E213 333 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 CAPN13Q6MZZ7 669 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 CEACAM20Q6UY09 585 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 GLDNQ6ZMI3 551 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 TMPRSS11AQ6ZMR5 421 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 TRMT1LQ7Z2T5 733 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 NRARPQ7Z6K4 114 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 PDZD9Q8IXQ8 264 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 UBALD2Q8IYN6 164 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 C15orf54Q8N8G6 183 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC38A9Q8NBW4 561 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 HJURPQ8NCD3 748 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 OR4S1Q8NGB4 309 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 OR10R2Q8NGX6 335 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2T4Q8NH00 348 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 PROKR1Q8TCW9 393 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM3CQ92520 227 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 JSRP1Q96MG2 331 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2M4Q96R27 311 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2A14Q96R47 310 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 OR7D2Q96RA2 312 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 SIGMAR1Q99720 223 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 MICU1Q9BPX6 476 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 LAT2Q9GZY6 243 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM49AQ9H0Q0 323 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ARL15Q9NXU5 204 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ABI3Q9P2A4 366 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 COMMD3Q9UBI1 195 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 PILRBQ9UKJ0 227 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 FBXO4Q9UKT5 387 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 MRPS28Q9Y2Q9 187 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 MYO7AQ13402 2215 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 PTPRZ1P23471 2315 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 LOC100509620A0A075B734 347 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 KIR2DL5BA0A0G2JN68 375 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 KIR2DL5BA0A0G2JPC4 375 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF726A6NNF4 738 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 DHRS7CA6NNS2 312 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC17A3O00476 420 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 DSCR3O14972 297 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 OR1F1O43749 312 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 FCN3O75636 299 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 GLUD1P00367 558 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 CFDP00746 253 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ORM1P02763 201 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ALDOBP05062 364 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 PRKCGP05129 697 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF35P13682 527 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 UGT2B7P16662 529 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZBTB25P24278 435 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 AK4P27144 223 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 EPHA2P29317 976 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 CHRNB4P30926 498 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 PIGAP37287 484 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 NBL1P41271 181 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 TMPRSS3P57727 454 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 BTN3A2P78410 334 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF763Q0D2J5 394 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 HTR4Q13639 388 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 PEA15Q15121 130 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 CDO1Q16878 200 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 HIST2H3PS2Q5TEC6 136 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM78BQ5VT40 261 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 TPRG1Q6ZUI0 275 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 H2BFWTQ7Z2G1 175 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 MDGA2Q7Z553 956 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC35E3Q7Z769 313 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 LAX1Q8IWV1 398 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 KIR2DL5AQ8N109 375 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 OR14L1PQ8NHC6 308 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 KIR2DL5BQ8NHK3 375 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 RPLP0P6Q8NHW5 317 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM110BQ8TC76 370 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 RAB8BQ92930 207 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 RCN3Q96D15 328 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 SMARCD1Q96GM5 515 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 NEDD4LQ96PU5 975 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 C20orf144Q9BQM9 153 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 SULT4A1Q9BR01 284 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM96AQ9H5X1 160 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms