RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NUBPLQ8TB37 319 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 C12orf57Q99622 126 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 ABCD4O14678 606 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 MTRF1O75570 445 aaKnown RBP10.56□□□□□ -0.72
MSH6-204ENST00000445503 DUS4LO95620 317 aaKnown RBP10.56□□□□□ -0.72
MSH6-204ENST00000445503 TTRP02766 147 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 FAHP16930 419 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 APOBEC1P41238 236 aaKnown RBP10.56□□□□□ -0.72
MSH6-204ENST00000445503 MTCP1P56278 107 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 DHODHQ02127 395 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 ZDHHC22Q8N966 263 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 HSD17B11Q8NBQ5 300 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 MITD1Q8WV92 249 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 EDAQ92838 391 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 C14orf79Q96F83 325 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 SOX7Q9BT81 388 aa10.56□□□□□ -0.72
MSH6-204ENST00000445503 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.56□□□□□ -0.72
MSH6-204ENST00000445503 WRBO00258 174 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 DXOO77932 396 aaKnown RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 ZBTB25P24278 435 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 RSPO4Q2I0M5 234 aaPredicted RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 RTN4RL2Q86UN3 420 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 OR52H1Q8NGJ2 320 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 OR51F2Q8NH61 342 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 ADIPOR1Q96A54 375 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 FLVCR1Q9Y5Y0 555 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 AUP1Q9Y679 476 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 C1orf196B1AJZ1 125 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 C2CD4DB7Z1M9 353 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 ANGPTL7O43827 346 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 NME2P1O60361 137 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 TRAPPC6AO75865 159 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 OR2J2O76002 312 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 DIRAS3O95661 229 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 CD27P26842 260 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 ROM1Q03395 351 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 ZNF260Q3ZCT1 412 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 BRICD5Q6PL45 260 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 CLEC18BQ6UXF7 455 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 MFSD8Q8NHS3 518 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 ASB10Q8WXI3 467 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 ZNF2Q9BSG1 426 aaPredicted RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 RHOFQ9HBH0 211 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 NXT1Q9UKK6 140 aaKnown RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 B3GALT5Q9Y2C3 310 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 PRELID3BQ9Y3B1 194 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 OMGP23515 440 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 NFYBP25208 207 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 CAV2P51636 162 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 HERV-K104P61576 105 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 IGLV3-21P80748 117 aaPredicted RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 PDCD1Q15116 288 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 TAF9Q16594 264 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 NKAIN1Q4KMZ8 207 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 AVPI1Q5T686 147 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 RPL7L1Q6DKI1 246 aaKnown RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 OR5AP2Q8NGF4 316 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 CMSS1Q9BQ75 279 aaKnown RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 ZNF442Q9H7R0 627 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 GPR173Q9NS66 373 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 DKKL1Q9UK85 242 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 RARRES3Q9UL19 164 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 BORCS7-ASMTA0A0B4J1R7 106 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 EFSO43281 561 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 TNFSF12O43508 249 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 XRCC2O43543 280 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 SCRG1O75711 98 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 HIST1H1DP16402 221 aaKnown RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 CSRP2Q16527 193 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 OGFOD3Q6PK18 319 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 C5orf46Q6UWT4 87 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 C20orf196Q8IYI0 205 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 ZNF519Q8TB69 540 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 DUSP15Q9H1R2 295 aaPredicted RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 PIGLQ9Y2B2 252 aa10.55□□□□□ -0.72
MSH6-204ENST00000445503 RBM7Q9Y580 266 aaKnown RBP10.55□□□□□ -0.72
MSH6-204ENST00000445503 RANBP2P49792 3224 aaKnown RBP10.54□□□□□ -0.72
MSH6-204ENST00000445503 LILRA5A6NI73 299 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 OR6C65A6NJZ3 312 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 OR6C76A6NM76 312 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 TXNL1O43396 289 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 ZFAND5O76080 213 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 OR8U9P0C7N5 309 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 NME1P15531 152 aaKnown RBP10.54□□□□□ -0.72
MSH6-204ENST00000445503 PTCRAQ6ISU1 281 aaPredicted RBP10.54□□□□□ -0.72
MSH6-204ENST00000445503 Q6ZRG5 221 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 DTWD2Q8NBA8 298 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 OR10G3Q8NGC4 313 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 SLAMF9Q96A28 289 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 ZMAT5Q9UDW3 170 aaKnown RBP10.54□□□□□ -0.72
MSH6-204ENST00000445503 PCDHGA1Q9Y5H4 931 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 FCGR2CP31995 323 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 FASLGP48023 281 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 TAS2R46P59540 309 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 PCK2Q16822 640 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 TEX30Q5JUR7 227 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 TFAP2EQ6VUC0 442 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 SUMF1Q8NBK3 374 aa10.54□□□□□ -0.72
MSH6-204ENST00000445503 OR8B12Q8NGG6 310 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms