RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ID1P41134 155 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF239Q16600 458 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 RRN3P1Q2M238 152 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ELFN2Q5R3F8 820 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TIPARPQ7Z3E1 657 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CADM4Q8NFZ8 388 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 SARGQ9BW04 601 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CRISPLD2Q9H0B8 497 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 C6orf106Q9H6K1 298 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 DIMT1Q9UNQ2 313 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CSAG2Q9Y5P2 127 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 IGHV3-20A0A0C4DH32 117 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF727A8MUV8 499 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 SPI1P17947 270 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 USF1P22415 310 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-204ENST00000423058 SSTR2P30874 369 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF83P51522 516 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 GNG3P63215 75 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 SSBP1Q04837 148 aaKnown RBP6.21□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF77Q15935 545 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 RPUSD3Q6P087 351 aaKnown RBP6.21□□□□□ -1.41
SCN1A-204ENST00000423058 DVL3Q92997 716 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-204ENST00000423058 GNRHR2Q96P88 292 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 TXNIPQ9H3M7 391 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 NARFLQ9H6Q4 476 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 FAM53CQ9NYF3 392 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 TRAV38-1A0A0B4J264 116 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 M0QYG6 137 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 OR13C7P0DN81 318 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 RNF151Q2KHN1 245 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 C1orf210Q8IVY1 113 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 UBALD1Q8TB05 177 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 APOBEC4Q8WW27 367 aaKnown RBP6.21□□□□□ -1.41
SCN1A-204ENST00000423058 SLC7A6Q92536 515 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 MRGPRX1Q96LB2 322 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 MKRN2Q9H000 416 aaKnown RBP6.21□□□□□ -1.41
SCN1A-204ENST00000423058 RBFOX1Q9NWB1 397 aaKnown RBP6.21□□□□□ -1.41
SCN1A-204ENST00000423058 CES1P1Q9UKY3 287 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 ST3GAL6Q9Y274 331 aa6.21□□□□□ -1.41
SCN1A-204ENST00000423058 LOC107986453A0A1B0GWG9 222 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 TCRBV3S1A0A5B6 114 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ANKUB1A6NFN9 424 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 OR2F2O95006 317 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ALOX5APP20292 161 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 PIGAP37287 484 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 OR2F1Q13607 317 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF273Q14593 569 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 SPCS2Q15005 226 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 PNLIPRP3Q17RR3 467 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 AFMIDQ63HM1 303 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ANKRD33Q7Z3H0 272 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM102Q8N9M5 508 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 RND1Q92730 232 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 OR6C3Q9NZP0 311 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 TBC1D29Q9UFV1 150 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 F5P12259 2224 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 FANCMQ8IYD8 2048 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ICOSLGO75144 302 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 CD1EP15812 388 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 M6PRP20645 277 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 LIPAP38571 399 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 RPS25P62851 125 aaKnown RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 TNFAIP6P98066 277 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 OR2B11Q5JQS5 317 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 JMJD6Q6NYC1 403 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 TRILQ7L0X0 811 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 OR51E1Q8TCB6 317 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 DPH3Q96FX2 82 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 PDXPQ96GD0 296 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 DOCK7Q96N67 2140 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ATOH8Q96SQ7 321 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ZMAT3Q9HA38 289 aaKnown RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 DAPP1Q9UN19 280 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 AMDHD2Q9Y303 409 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 URGCP-MRPS24S4R325 110 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ARAP2Q8WZ64 1704 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 PRSS37A4D1T9 235 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 TOX3O15405 576 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF354AO60765 605 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ABLIM3O94929 683 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 COX6B1P14854 86 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF17P17021 662 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 OR2G6Q5TZ20 316 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 KLHDC9Q8NEP7 349 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 OR52N4Q8NGI2 321 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 RDH5Q92781 318 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 MRGPRX3Q96LB0 322 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 RSRP1Q9BUV0 290 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 CLEC5AQ9NY25 188 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 CYB5R1Q9UHQ9 305 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 TRABD2BA6NFA1 517 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 POM121CA8CG34 1229 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 SULT1A3P0DMM9 295 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 SULT1A4P0DMN0 295 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 KIR2DL1P43626 348 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 KIR2DL2P43627 348 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 PIGPP57054 158 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 HLA-BQ31612 363 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF787Q6DD87 383 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 ALKAL2Q6UX46 152 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms