RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FMO3P31513 532 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 CX3CR1P49238 355 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 EIF2B1Q14232 305 aaKnown RBP9.56□□□□□ -0.88
USP4-204ENST00000416417 SLC16A9Q7RTY1 509 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 C11orf53Q8IXP5 236 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 IQCF1Q8N6M8 205 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 LRRC29Q8WV35 223 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 WFDC12Q8WWY7 111 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 OTULINQ96BN8 352 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 AMELYQ99218 206 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 KCNJ15Q99712 375 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 SLC22A4Q9H015 551 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 PRDM13Q9H4Q3 707 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 TAS2R1Q9NYW7 299 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 IL20Q9NYY1 176 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 MRPL15Q9P015 296 aaKnown RBP9.56□□□□□ -0.88
USP4-204ENST00000416417 ZNF319Q9P2F9 582 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 TRAV38-1A0A0B4J264 116 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 IGHV1-69DA0A0B4J2H0 117 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 IGHV1-69P01742 117 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 SELLP14151 372 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 NPY4RP50391 375 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 HMGA2P52926 109 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 FAM3AP98173 230 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 PCK2Q16822 640 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 MIDNQ504T8 468 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 METTL11BQ5VVY1 283 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 CD276Q5ZPR3 534 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 RASSF6Q6ZTQ3 369 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 FAM57BQ71RH2 274 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 FAM216BQ8N7L0 139 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 OR5T2Q8NGG2 359 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 OR6N2Q8NGY6 317 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 OR8S1Q8NH09 359 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 GATAD2BQ8WXI9 593 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 SGK3Q96BR1 496 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 REEP6Q96HR9 211 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 NMNAT2Q9BZQ4 307 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 SLITRK2Q9H156 845 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 BEX1Q9HBH7 125 aa9.56□□□□□ -0.88
USP4-204ENST00000416417 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.55□□□□□ -0.88
USP4-204ENST00000416417 TCRBV5S2A0A599 114 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 ANKRD30BLA7E2S9 258 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 ZNF878C9JN71 531 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 KRT36O76013 467 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 LHBP01229 141 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 IKZF1Q13422 519 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 KCNJ8Q15842 424 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 TIGD6Q17RP2 521 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 KLHL12Q53G59 568 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 WDR38Q5JTN6 314 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 LINC01590Q5TEZ4 76 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 OLFML2AQ68BL7 652 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 BRICD5Q6PL45 260 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 C16orf89Q6UX73 402 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 C17orf107Q6ZR85 190 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 DPY19L4Q7Z388 723 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 VMO1Q7Z5L0 202 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 ERI1Q8IV48 349 aaKnown RBP9.55□□□□□ -0.88
USP4-204ENST00000416417 LINC00471Q8N535 108 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 PNLDC1Q8NA58 520 aaKnown RBP9.55□□□□□ -0.88
USP4-204ENST00000416417 SCCPDHQ8NBX0 429 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 NIPSNAP1Q9BPW8 284 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 NOX4Q9NPH5 578 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 SNTG1Q9NSN8 517 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 ACOXLQ9NUZ1 547 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 ONECUT1Q9UBC0 465 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 NOP16Q9Y3C1 178 aaKnown RBP9.55□□□□□ -0.88
USP4-204ENST00000416417 RHBDD3Q9Y3P4 386 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 MMP24Q9Y5R2 645 aa9.55□□□□□ -0.88
USP4-204ENST00000416417 CMYA5Q8N3K9 4069 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.54□□□□□ -0.88
USP4-204ENST00000416417 ACOT8O14734 319 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 XRCC2O43543 280 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 GPR137BO60478 399 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 AMY2BP19961 511 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 HSD11B1P28845 292 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 SLC25A1P53007 311 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 ZNF121P58317 390 aaPredicted RBP9.54□□□□□ -0.88
USP4-204ENST00000416417 GNGT1P63211 74 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 KLRD1Q13241 179 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 PDLIM3Q53GG5 364 aaPredicted RBP9.54□□□□□ -0.88
USP4-204ENST00000416417 TEX36Q5VZQ5 186 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 RPL13AP3Q6NVV1 102 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 PNKDQ8N490 385 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 PIP4P2Q8N4L2 257 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 PLPP7Q8NBV4 271 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 OR2T33Q8NG76 320 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 OR1M1Q8NGA1 313 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 OR4F5Q8NH21 305 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 SPSB4Q96A44 273 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 FAM71F1Q96KD3 344 aaPredicted RBP9.54□□□□□ -0.88
USP4-204ENST00000416417 CCT8L2Q96SF2 557 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 ABHD6Q9BV23 337 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 TRIM15Q9C019 465 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 FGF23Q9GZV9 251 aaPredicted RBP9.54□□□□□ -0.88
USP4-204ENST00000416417 SIRT7Q9NRC8 400 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 C14orf119Q9NWQ9 140 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 KIF17Q9P2E2 1029 aa9.54□□□□□ -0.88
USP4-204ENST00000416417 RPUSD1Q9UJJ7 312 aaKnown RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms