RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ZNF627Q7L945 461 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 ZADH2Q8N4Q0 377 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 ZNF680Q8NEM1 530 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 FGGYQ96C11 551 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 ASF1BQ9NVP2 202 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 SLC5A6Q9Y289 635 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 ESPL1Q14674 2120 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 LINC00862A6NCI5 91 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 SULT2B1O00204 365 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 EIF1AYO14602 144 aaKnown RBP13.04□□□□□ -0.32
USP4-203ENST00000415188 TSC22D2O75157 780 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 CYB5AP00167 134 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 CD3DP04234 171 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 RLN1P04808 185 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 ZNF20P17024 532 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 CCL1P22362 96 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 SSR4P51571 173 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 ZNF133P52736 654 aaPredicted RBP13.04□□□□□ -0.32
USP4-203ENST00000415188 DSCR4P56555 118 aaPredicted RBP13.04□□□□□ -0.32
USP4-203ENST00000415188 TSPAN5P62079 268 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 POU4F3Q15319 338 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 TAF13Q15543 124 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 TMEM176BQ3YBM2 270 aaPredicted RBP13.04□□□□□ -0.32
USP4-203ENST00000415188 HIST2H2BCQ6DN03 193 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 Q6ZS92 163 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 PGAP1Q75T13 922 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 OR2W3Q7Z3T1 314 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 ARMC10Q8N2F6 343 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 FTMTQ8N4E7 242 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 OR51S1Q8NGJ8 323 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 AQP3Q92482 292 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 RELTQ969Z4 430 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 NAA11Q9BSU3 229 aaPredicted RBP13.04□□□□□ -0.32
USP4-203ENST00000415188 KCNK15Q9H427 330 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 EXO5Q9H790 373 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 SH2D2AQ9NP31 389 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 PHF3Q92576 2039 aaKnown RBP13.04□□□□□ -0.32
USP4-203ENST00000415188 A0A1B0GTI1 187 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 A0A1W2PNR3 127 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 PLSCR5A0PG75 271 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 TBPP20226 339 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 CTSSP25774 331 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 GNALP38405 381 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 C10orf128Q5T292 105 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 CFAP77Q6ZQR2 320 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 FOXL2NBQ6ZUU3 175 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 GPAT4Q86UL3 456 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 CCDC54Q8NEL0 328 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 OR1J2Q8NGS2 313 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 PRR7Q8TB68 274 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 PAQR8Q8TEZ7 354 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 SLC2A8Q9NY64 477 aa13.04□□□□□ -0.32
USP4-203ENST00000415188 DOCK10Q96BY6 2186 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 SPTBN1Q01082 2364 aaKnown RBP13.03□□□□□ -0.32
USP4-203ENST00000415188 ICE1Q9Y2F5 2266 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 HMSDA8MTL9 139 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 ZNF736B4DX44 427 aaPredicted RBP13.03□□□□□ -0.32
USP4-203ENST00000415188 DISC1C4P0D8 188 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 M0R233 179 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 DNPH1O43598 174 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 CHRM2P08172 466 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 EIF1AXP47813 144 aaKnown RBP13.03□□□□□ -0.32
USP4-203ENST00000415188 CSNK2A1P68400 391 aaPredicted RBP13.03□□□□□ -0.32
USP4-203ENST00000415188 QRFPP83859 136 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 ZNF260Q3ZCT1 412 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 DOK3Q7L591 496 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 ZNF584Q8IVC4 421 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 OR2AK2Q8NG84 335 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 OR4D6Q8NGJ1 314 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 SSC4DQ8WTU2 575 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 MARVELD3Q96A59 401 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 INTS12Q96CB8 462 aaKnown RBP13.03□□□□□ -0.32
USP4-203ENST00000415188 ADAT3Q96EY9 351 aaPredicted RBP13.03□□□□□ -0.32
USP4-203ENST00000415188 THOC3Q96J01 351 aaKnown RBP13.03□□□□□ -0.32
USP4-203ENST00000415188 TMEM185BQ9H7F4 350 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 CNTD2Q9H8S5 307 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 SEC61A2Q9H9S3 476 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 ZNF160Q9HCG1 818 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 UBQLN2Q9UHD9 624 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 AUP1Q9Y679 476 aa13.03□□□□□ -0.32
USP4-203ENST00000415188 OR6C65A6NJZ3 312 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 GJE1A6NN92 205 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 H3BUI4 141 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 LMX1BO60663 402 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 HPP00738 406 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 QDPRP09417 244 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 UBBP0CG47 229 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 SFTPDP35247 375 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 CSNK1A1P48729 337 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 MLF1P58340 268 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 H3F3AP84243 136 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 ESCO2Q56NI9 601 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 CLLU1Q5K131 121 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 IGFL2Q6UWQ7 119 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 OR4D10Q8NGI6 311 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 ANGPTL6Q8NI99 470 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 TMEM54Q969K7 222 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 TMEM41AQ96HV5 264 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 PRRT1Q99946 306 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 CHIAQ9BZP6 476 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms