RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PPP1R3CQ9UQK1 317 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 R4GMQ9 66 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 HSD17B6O14756 317 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 STATHP02808 62 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 CRYBA1P05813 215 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 HEXAP06865 529 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 HYAL4Q2M3T9 481 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 TMEM65Q6PI78 240 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 LIPHQ8WWY8 451 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 IL21Q9HBE4 155 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 BCL2L10Q9HD36 194 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 TGIF2-C20orf24A0A0A6YYL0 155 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 TCL1AP56279 114 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 SPANXN5Q5MJ07 72 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 LINC00052Q96N35 136 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 FOXN4Q96NZ1 517 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 IKZF5Q9H5V7 419 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 MPTX1A8MV57 137 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 AGFG1P52594 562 aaKnown RBP11.72□□□□□ -0.53
COL6A3-206ENST00000409809 BSXQ3C1V8 233 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 LINC00303Q3SY05 128 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 TMEM183AQ8IXX5 376 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 PRSS3P2Q8NHM4 247 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 PRDM7Q9NQW5 492 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 TMEM167BQ9NRX6 74 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 LRP6O75581 1613 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 SPHK2Q9NRA0 654 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 MMACHCQ9Y4U1 282 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 KMT2EQ8IZD2 1858 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 CRYM-AS1A6NIL9 109 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 ARPC3O15145 178 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 FAM87AP0C7U9 286 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 APOBEC1P41238 236 aaKnown RBP11.72□□□□□ -0.53
COL6A3-206ENST00000409809 NPBWR2P48146 333 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 CARD18P57730 90 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 CYB5R2Q6BCY4 276 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 TRAT1Q6PIZ9 186 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 LSM2Q9Y333 95 aaKnown RBP11.72□□□□□ -0.53
COL6A3-206ENST00000409809 PRAMEF25A6NGN4 478 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 COX6CP09669 75 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 IGFBP7Q16270 282 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 SYPL1Q16563 259 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 PRAMEF5Q5TYX0 476 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 PRAMEF6Q5VXH4 476 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 OR5M1Q8NGP8 315 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 GPR62Q9BZJ7 368 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 DLEC1Q9Y238 1755 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 TRBV9A0A0B4J1U6 114 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 ZNF840PA6NDX5 716 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 ZFAND5O76080 213 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 SNRPNP63162 240 aaKnown RBP11.72□□□□□ -0.53
COL6A3-206ENST00000409809 OR8G1Q15617 311 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 TUSC1Q2TAM9 212 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 PLA2G12AQ9BZM1 189 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 FRS3O43559 492 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 PLPP2O43688 288 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 HTR1DP28221 377 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 SCAMP4Q969E2 229 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 WDR34Q96EX3 536 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 TMEM70Q9BUB7 260 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 SSC5DA1L4H1 1573 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 SH2D1BO14796 132 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 KLF7O75840 302 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-206ENST00000409809 RPL27P61353 136 aaKnown RBP11.72□□□□□ -0.53
COL6A3-206ENST00000409809 ABHD17BQ5VST6 288 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 TXNDC8Q6A555 127 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 ARRDC3Q96B67 414 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 IL17BQ9UHF5 180 aa11.72□□□□□ -0.53
COL6A3-206ENST00000409809 HPP00738 406 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 ANKRD34CP0C6C1 535 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 POU3F2P20265 443 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-206ENST00000409809 P2RY1P47900 373 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 PRDX1Q06830 199 aaKnown RBP11.71□□□□□ -0.53
COL6A3-206ENST00000409809 C6orf132Q5T0Z8 1188 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 ELOVL1Q9BW60 279 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 DDA1Q9BW61 102 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 OR5AC2Q9NZP5 309 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 VAX2Q9UIW0 290 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 MCM3APO60318 1980 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 HLA-GP17693 338 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 NKAIN1Q4KMZ8 207 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 PIK3IP1Q96FE7 263 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 DOK5Q9P104 306 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 PEF1Q9UBV8 284 aaKnown RBP11.71□□□□□ -0.53
COL6A3-206ENST00000409809 NAGKQ9UJ70 344 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 ITGB4P16144 1822 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 CORTO00230 105 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 GABRA1P14867 456 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 POLR2IP36954 125 aaKnown RBP11.71□□□□□ -0.53
COL6A3-206ENST00000409809 H1FNTQ75WM6 255 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-206ENST00000409809 MRGPRGQ86SM5 289 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 ZNF480Q8WV37 535 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 MBD3L1Q8WWY6 194 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 CALHM2Q9HA72 323 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 ATXN7L1Q9ULK2 861 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-206ENST00000409809 A0A1W2PN81 502 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 COX7A2P2O60397 106 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 CHRNA7P36544 502 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 RTL8AQ9BWD3 113 aa11.71□□□□□ -0.53
COL6A3-206ENST00000409809 ZDHHC8Q9ULC8 765 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms