RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 Q6ZTK2 550 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 ISCA2Q86U28 154 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 C11orf42Q8N5U0 333 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 OR6M1Q8NGM8 313 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 TM4SF18Q96CE8 201 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF501Q96CX3 271 aaPredicted RBP6.57□□□□□ -1.36
SCN9A-202ENST00000409435 TINAGQ9UJW2 476 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 STRAPQ9Y3F4 350 aaKnown RBP6.57□□□□□ -1.36
SCN9A-202ENST00000409435 DCTN6O00399 190 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 SPINT2O43291 252 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 HSBP1O75506 76 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 EEDO75530 441 aaKnown RBP6.57□□□□□ -1.36
SCN9A-202ENST00000409435 NUDT3O95989 172 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 BMP2P12643 396 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 HTR2CP28335 458 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 PPP1CAP62136 330 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 UBE2IP63279 158 aaKnown RBP6.57□□□□□ -1.36
SCN9A-202ENST00000409435 ACSM1Q08AH1 577 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 ZFP41Q8N8Y5 198 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 OR51T1Q8NGJ9 327 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 OR2A1Q8NGT9 310 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 FAM168AQ92567 244 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 ZCCHC4Q9H5U6 513 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 NTMQ9P121 344 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 TRAPPC2LQ9UL33 140 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 IER3IP1Q9Y5U9 82 aa6.57□□□□□ -1.36
SCN9A-202ENST00000409435 EDIL3O43854 480 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 HPGDSO60760 199 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 QDPRP09417 244 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 DTYMKP23919 212 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 PPOXP50336 477 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 LPCAT3Q6P1A2 487 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 RPL22L1Q6P5R6 122 aaKnown RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 GLB1L2Q8IW92 636 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 RAB40AQ8WXH6 277 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 SLCO2A1Q92959 643 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CSF3RQ99062 836 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 TPPP3Q9BW30 176 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CTDSP1Q9GZU7 261 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 ISYNA1Q9NPH2 558 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 TRAV34A0A0B4J273 112 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 OR2A25A4D2G3 310 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 ZFP92A6NM28 416 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF724A8MTY0 619 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 TAAR5O14804 337 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 GCAP28676 217 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 DIO1P49895 249 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 COL5A1-AS1Q5SY13 56 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 SLC16A13Q7RTY0 426 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 DCXRQ7Z4W1 244 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 OR5A2Q8NGI9 324 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 FAM131CQ96AQ9 280 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 COX14Q96I36 57 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 PRRC1Q96M27 445 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 SAP30LQ9HAJ7 183 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 TAF9BQ9HBM6 251 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 PRDM7Q9NQW5 492 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 MED9Q9NWA0 146 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 GPR52Q9Y2T5 361 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 IGHV1-45A0A0A0MS14 117 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 GLAP06280 429 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 ACAA2P42765 397 aaKnown RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 PLP1P60201 277 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 SRPXP78539 464 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 OR5I1Q13606 314 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 PLAC9Q5JTB6 97 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 C1QTNF12Q5T7M4 302 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 FAM57AQ8TBR7 257 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 DYNC2LI1Q8TCX1 351 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 MCHR2Q969V1 340 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 MIB2Q96AX9 1013 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 MEGF10Q96KG7 1140 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 EXOSC3Q9NQT5 275 aaKnown RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 GMPR2Q9P2T1 348 aaKnown RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 MCM3APO60318 1980 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 HPNP05981 417 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CT45A6P0DMU7 189 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CT45A5P0DMU8 189 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CT45A7P0DMV0 189 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CT45A8P0DMV1 189 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CT45A9P0DMV2 189 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 RPL34P49207 117 aaKnown RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 PSMB2P49721 201 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 BTG1P62324 171 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 BAXQ07812 192 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CT45A2Q5DJT8 189 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CT45A1Q5HYN5 189 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 UBE2NLQ5JXB2 153 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 LYPD4Q6UWN0 246 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CT45A3Q8NHU0 189 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 SLC7A6Q92536 515 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 MS4A10Q96PG2 267 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 REPIN1Q9BWE0 567 aaKnown RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 PARD6GQ9BYG4 376 aaPredicted RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 RCE1Q9Y256 329 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 POLDIP2Q9Y2S7 368 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF281Q9Y2X9 895 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 PPIL1Q9Y3C6 166 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 AQP7P3A6NL99 342 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms