RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 LIMS4P0CW20 117 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 RNF224P0DH78 156 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 RBMY1CP0DJD4 496 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 UCHL3P15374 230 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF250P15622 560 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 SLC2A5P22732 501 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 DCTP40126 519 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 CSRP3P50461 194 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 IDH3GP51553 393 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 CAV2P51636 162 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 STC1P52823 247 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 DVL1P1P54792 670 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 RHOAP61586 193 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF45Q02386 682 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 TGFBR3Q03167 851 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ECH1Q13011 328 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 MLLT11Q13015 90 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 SPA17Q15506 151 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 NSUN5P1Q3KNT7 163 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ZBED5Q49AG3 693 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 OGFRL1Q5TC84 451 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 SPSB3Q6PJ21 355 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 DNM1P34Q6PK57 102 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 C5orf46Q6UWT4 87 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 TMED4Q7Z7H5 227 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 CARM1Q86X55 608 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 DHFR2Q86XF0 187 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 OR52B6Q8NGF0 335 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 OR11L1Q8NGX0 322 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 DOK4Q8TEW6 326 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 CRYGNQ8WXF5 182 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 EEF1AKMT3Q96AZ1 226 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 PAGE5Q96GU1 130 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 NOL4LQ96MY1 436 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 RILPQ96NA2 401 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 TSNAXQ99598 290 aaKnown RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 RARRES2Q99969 163 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 SEC22CQ9BRL7 303 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF717Q9BY31 904 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ACTR6Q9GZN1 396 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 MFSD1Q9H3U5 465 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 DEPPQ9NTK1 212 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 DDX19AQ9NUU7 478 aaKnown RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 BTNL2Q9UIR0 455 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 NDRG2Q9UN36 371 aaKnown RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ARL5AQ9Y689 179 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 POLR1AO95602 1720 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 RFX7Q2KHR2 1363 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 CCNB3Q8WWL7 1395 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 CLTCQ00610 1675 aaKnown RBP3.31□□□□□ -1.88
HMGB1-204ENST00000399489 KIAA1107Q9UPP5 1409 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 KDM5DQ9BY66 1539 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF816-ZNF321PA0A0X1KG74 233 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 A0A1W2PS18 150 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PRR23AA6NEV1 266 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 FAM166BA8MTA8 275 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ANKRD63C9JTQ0 380 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 F5H768 121 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 K7EQD1 137 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 CCRL2O00421 344 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 GABRPO00591 440 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 CST8O60676 142 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 MED6O75586 246 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SCRG1O75711 98 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 NXPH4O95158 308 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 IFNA21P01568 189 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 OR8U9P0C7N5 309 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ZDHHC11BP0C7U3 371 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 GPM6AP51674 278 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 OR4D2P58180 307 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 MRPS11P82912 194 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PUDPQ08623 228 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SRSF6Q13247 344 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 KRR1Q13601 381 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PARP15Q460N3 678 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ACSM3Q53FZ2 586 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 WDR38Q5JTN6 314 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 MUC21Q5SSG8 566 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 FAM45BPQ6NSW5 357 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 RWDD4Q6NW29 188 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 MED27Q6P2C8 311 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 CASP12Q6UXS9 341 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TFAP2EQ6VUC0 442 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 NPSR1Q6W5P4 371 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 CREB3L2Q70SY1 520 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 CHMP1BQ7LBR1 199 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 LYG2Q86SG7 212 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TMEM150AQ86TG1 271 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PHF13Q86YI8 300 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ARRDC1Q8N5I2 433 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PXT1Q8NFP0 134 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 OR8U1Q8NH10 309 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 LMO3Q8TAP4 145 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 MAPK15Q8TD08 544 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 FGF11Q92914 225 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ANKRD9Q96BM1 317 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 HBEGFQ99075 208 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 GPR22Q99680 433 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 HOPXQ9BPY8 73 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 DDA1Q9BW61 102 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms