RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SLC46A2Q9BY10 475 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 NKX2-4Q9H2Z4 354 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 PDE7BQ9NP56 450 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 LRIT1Q9P2V4 623 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 PRODH2Q9UF12 536 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 RCL1Q9Y2P8 373 aaKnown RBP8.36□□□□□ -1.07
COL28A1-201ENST00000399429 OR51B4Q9Y5P0 310 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SLCO1B1Q9Y6L6 691 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 RTTNQ86VV8 2226 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 A0A1W2PNV4 684 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 A0A1W2PP55 124 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 DBX1A6NMT0 343 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 H3BML4 177 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SIAH2O43255 324 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SSSCA1O60232 199 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 ABLIM3O94929 683 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 OPN1LWP04000 364 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SELLP14151 372 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 TBPP20226 339 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 PIGPP57054 158 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SLC43A2Q8N370 569 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 ARRDC1Q8N5I2 433 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 OR4N2Q8NGD1 307 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 M1APQ8TC57 530 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 KISS1RQ969F8 398 aaPredicted RBP8.36□□□□□ -1.07
COL28A1-201ENST00000399429 MRPL38Q96DV4 380 aaKnown RBP8.36□□□□□ -1.07
COL28A1-201ENST00000399429 NUDT22Q9BRQ3 303 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SMOC1Q9H4F8 434 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 EPHX3Q9H6B9 360 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 COPS7AQ9UBW8 275 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 CCL26Q9Y258 94 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 STRCP1A6NGW2 1772 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.36□□□□□ -1.07
COL28A1-201ENST00000399429 FGF17O60258 216 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 PGCP20142 388 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 DUSP1P28562 367 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SEC13P55735 322 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SCAND1P57086 179 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 RAB38P57729 211 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 GFI1BQ5VTD9 330 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SPNS3Q6ZMD2 512 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 NPEPL1Q8NDH3 523 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 OR13D1Q8NGV5 346 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 NXPE3Q969Y0 559 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 WDR34Q96EX3 536 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 REEP6Q96HR9 211 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 BTF3L4Q96K17 158 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 RARRES2Q99969 163 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 ZFYVE21Q9BQ24 234 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.36□□□□□ -1.07
COL28A1-201ENST00000399429 GREB1LQ9C091 1923 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 NSG1A0A0A6YYJ2 146 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 H3BP45 60 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 EFSO43281 561 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 TBX19O60806 448 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 TIMP1P01033 207 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 MMP9P14780 707 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 SMAD4Q13485 552 aaKnown RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 USP50Q70EL3 339 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 MAML2Q8IZL2 1156 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 DTWD2Q8NBA8 298 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 MFSD9Q8NBP5 474 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 OR56B2PQ8NGI1 322 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 THAP3Q8WTV1 239 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 RAB24Q969Q5 203 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 VAMP8Q9BV40 100 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 RYDENQ9NUL5 291 aaKnown RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 A0A1W2PPC1 479 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 EPPINO95925 133 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 SERPINE2P07093 398 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 HTR5AP47898 357 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 POU3F1Q03052 451 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 TLE3Q04726 772 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 CDKN3Q16667 212 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 FAHD2BQ6P2I3 314 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 LANCL3Q6ZV70 420 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 FAM57BQ71RH2 274 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 RTN4RL1Q86UN2 441 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 ARL6IP6Q8N6S5 226 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 CYB561D1Q8N8Q1 229 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 APCDD1LQ8NCL9 501 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 OR2A1Q8NGT9 310 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 RNF128Q8TEB7 428 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 SDSLQ96GA7 329 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 FAHD2AQ96GK7 314 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 ABHD6Q9BV23 337 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 MARCH5Q9NX47 278 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 FKBP11Q9NYL4 201 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 KLHL13Q9P2N7 655 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 PAM16Q9Y3D7 125 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 GOLGB1Q14789 3259 aaKnown RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 F5P12259 2224 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 SSC5DA1L4H1 1573 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 LOC390937A0A1W2PQ73 354 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 FAM221AA4D161 298 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 ONECUT2O95948 504 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 FCGR2AP12318 317 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 CARD18P57730 90 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 SLC26A10Q8NG04 563 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms