RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PKIBQ9C010 78 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 OR2J1Q9GZK6 312 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 GPR160Q9UJ42 338 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 ZFYVE26Q68DK2 2539 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 VSTM5A8MXK1 200 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 IGHV1-46P01743 117 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 MRPL3P09001 348 aaKnown RBP5.95□□□□□ -1.46
LIMA1-202ENST00000394943 UCHL1P09936 223 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 C21orf33P30042 268 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-202ENST00000394943 CRYBB2P43320 205 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 GBX2P52951 348 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-202ENST00000394943 DBPQ10586 325 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-202ENST00000394943 MALLQ13021 153 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 CEACAM21Q3KPI0 293 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 NHLRC3Q5JS37 347 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ATPAF1Q5TC12 328 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM200AQ86VY9 491 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 OR5A2Q8NGI9 324 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 THEM6Q8WUY1 208 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 CMBLQ96DG6 245 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 KCNS3Q9BQ31 491 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 MS4A5Q9H3V2 200 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 TRIM36Q9NQ86 728 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF816-ZNF321PA0A0X1KG74 233 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM269A0A1B0GVZ9 245 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 CD300LBA8K4G0 201 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 HLA-DQA2P01906 255 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 GABRA5P31644 462 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 RPS27P42677 84 aaKnown RBP5.95□□□□□ -1.46
LIMA1-202ENST00000394943 PTH2RP49190 550 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 FABP6P51161 128 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 EFNA4P52798 201 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ERVS71-1P61550 626 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 MZT1Q08AG7 82 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 SSX1Q16384 188 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 GDPGP1Q6ZNW5 385 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 LRP11Q86VZ4 500 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF540Q8NDQ6 660 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 HPSE2Q8WWQ2 592 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 SGCDQ92629 289 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 DNTTIP1Q9H147 329 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 RASL12Q9NYN1 266 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF281Q9Y2X9 895 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 TRAV1-2A0A0B4J238 106 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 OR5B21A6NL26 309 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 A8MXK9 166 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 LOC110117498-PIK3R3F6TDL0 507 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 MTRF1O75570 445 aaKnown RBP5.95□□□□□ -1.46
LIMA1-202ENST00000394943 INMTO95050 263 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ZFPL1O95159 310 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 HSD11B1P28845 292 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ZP1P60852 638 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 SPHARQ15513 63 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 BCL2L15Q5TBC7 163 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 FAM220AQ7Z4H9 259 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 WDR86Q86TI4 376 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF786Q8N393 782 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 MS4A15Q8N5U1 240 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ZSCAN4Q8NAM6 433 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-202ENST00000394943 OR10H4Q8NGA5 316 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 GPR148Q8TDV2 347 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 OR51I2Q9H344 312 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 NCOR1P1Q9H4R4 102 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ATP23Q9Y6H3 246 aa5.95□□□□□ -1.46
LIMA1-202ENST00000394943 ZSCAN5BA6NJL1 495 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 MAP2K3P46734 347 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 RPS7P62081 194 aaKnown RBP5.94□□□□□ -1.46
LIMA1-202ENST00000394943 FOXD4Q12950 439 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-202ENST00000394943 CLVS2Q5SYC1 327 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 SHEQ5VZ18 495 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 ELP2Q6IA86 826 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 PGAP1Q75T13 922 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 OR5AS1Q8N127 324 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 ABHD4Q8TB40 342 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 DACT3Q96B18 629 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-202ENST00000394943 SPSB1Q96BD6 273 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 CNBD2Q96M20 576 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 TRDV1A0A1B0GX56 115 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 CLPTM1O96005 669 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 MYL12AP19105 171 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 IL24Q13007 206 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 MAB21L1Q13394 359 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 TP53I3Q53FA7 332 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 SLC22A25Q6T423 547 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM91Q6ZNR0 172 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 LRRTM1Q86UE6 522 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 PHC2Q8IXK0 858 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 YIPF7Q8N8F6 280 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 BPIFB6Q8NFQ5 453 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 OR13G1Q8NGZ3 307 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 SNX33Q8WV41 574 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 SLC7A6Q92536 515 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 C12orf43Q96C57 262 aaKnown RBP5.94□□□□□ -1.46
LIMA1-202ENST00000394943 DERL3Q96Q80 235 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 MRPS26Q9BYN8 205 aaKnown RBP5.94□□□□□ -1.46
LIMA1-202ENST00000394943 PTTG3PQ9NZH4 202 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 KAAG1Q9UBP8 84 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 ENPP5Q9UJA9 477 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 MYO7BQ6PIF6 2116 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 NAT2P11245 290 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms