RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 OR2A1Q8NGT9 310 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 APOBEC3DQ96AK3 386 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 CHST6Q9GZX3 395 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 HINT3Q9NQE9 182 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 FOXJ3Q9UPW0 622 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 LSM2Q9Y333 95 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 UBE2L5PA0A1B0GUS4 154 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 PRSS44E7EML9 344 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 RNASEK-C17orf49H0YIS7 233 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 OR5H8P0DN80 308 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 MPGP29372 298 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 GPR3P46089 330 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 FUNDC1Q8IVP5 155 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 TDHQ8IZJ6 230 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 IGHV3-64DA0A0J9YX35 117 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 LOC102723971A0A1B0GUV8 181 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 CXCL13O43927 109 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 KIR2DS2P43631 304 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 C8orf44Q96CB5 159 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 TOPAZ1Q8N9V7 1692 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 B4GALT3O60512 393 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 KRTDAPP60985 99 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 C16orf52Q8NHV5 167 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 ACY3Q96HD9 319 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 SERPINE3A8MV23 424 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 SULT1A3P0DMM9 295 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 SULT1A4P0DMN0 295 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 PCBP4P57723 403 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 SLC25A26Q70HW3 274 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 ST8SIA4Q92187 359 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 LAMA4Q16363 1823 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 TRIM77I1YAP6 450 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 EMDP50402 254 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 TRMT61AQ96FX7 289 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 TMEM147Q9BVK8 224 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 SRFP11831 508 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 PLA1AQ53H76 456 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 CHAC2Q8WUX2 184 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 FAM221AA4D161 298 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 H0Y8X5 98 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 DUS4LO95620 317 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 RBP4P02753 201 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 CD37P11049 281 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 ZBTB25P24278 435 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 FAM53BQ14153 422 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 TMEM229BQ8NBD8 167 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 OR4F17Q8NGA8 305 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 FKBP11Q9NYL4 201 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 TEX50A0A1B0GTY4 177 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 MYOGP15173 224 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 CLDN20P56880 219 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 STUMQ69YW2 141 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 ACSM5Q6NUN0 579 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 SLC36A1Q7Z2H8 476 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 WFDC5Q8TCV5 224 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 UBE2FQ969M7 185 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 TUBAL3A6NHL2 446 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 LY86O95711 162 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 MARCH1Q8TCQ1 289 aa11.56□□□□□ -0.56
CCDC88C-204ENST00000389857 ANKRD34CP0C6C1 535 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 GABRB1P18505 474 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 AQP6Q13520 282 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 OR1J1Q8NGS3 322 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 AMMECR1Q9Y4X0 333 aaPredicted RBP11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 B3GALNT1O75752 331 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 B4GALT1P15291 398 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 ARNTP27540 789 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 KCNJ3P48549 501 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 MOGAT2Q3SYC2 334 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 TRAT1Q6PIZ9 186 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 ORM1P02763 201 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 GLI4P10075 376 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 ISL1P61371 349 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 CDK5R1Q15078 307 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 BTLAQ7Z6A9 289 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF561Q8N587 486 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 TTC9Q92623 222 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 ADGRG7Q96K78 797 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 TAAR9Q96RI9 348 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 GPR31O00270 319 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 BTG2P78543 158 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 OXA1LQ15070 435 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 NEIL1Q96FI4 390 aaPredicted RBP11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 LAMB1P07942 1786 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 SLC19A1P41440 591 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 GRAMD2BQ96HH9 432 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 NOL4LQ96MY1 436 aaPredicted RBP11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 SPACA5Q96QH8 159 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 TMEM231Q9H6L2 316 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 TRAV1-2A0A0B4J238 106 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 BCL2L11O43521 198 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 TSPAN12O95859 305 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 ST6GAL1P15907 406 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 TMEM207Q6UWW9 146 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 NT5CQ8TCD5 201 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 NUDCD2Q8WVJ2 157 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 CBY1Q9Y3M2 126 aa11.55□□□□□ -0.56
CCDC88C-204ENST00000389857 SPRY3O43610 288 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 HRASP01112 189 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 HGDQ93099 445 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms