RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 CECR9P0C854 216 aa23.17■■□□□ 1.3
MSX1-201ENST00000382723 FAM157BP0CG42 384 aa23.17■■□□□ 1.3
MSX1-201ENST00000382723 THBS4P35443 961 aa23.17■■□□□ 1.3
MSX1-201ENST00000382723 RIPPLY1Q0D2K3 151 aa23.17■■□□□ 1.3
MSX1-201ENST00000382723 GLT8D1Q68CQ7 371 aa23.17■■□□□ 1.3
MSX1-201ENST00000382723 JAGN1Q8N5M9 183 aa23.17■■□□□ 1.3
MSX1-201ENST00000382723 TMEM138Q9NPI0 162 aa23.17■■□□□ 1.3
MSX1-201ENST00000382723 USP24Q9UPU5 2620 aa23.17■■□□□ 1.3
MSX1-201ENST00000382723 MEGF11A6BM72 1044 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 ZNF83P51522 516 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 PPA1Q15181 289 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 TAB1Q15750 504 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 ZNF529Q6P280 563 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 MRPL21Q7Z2W9 205 aaKnown RBP23.16■■□□□ 1.3
MSX1-201ENST00000382723 SAMD12Q8N8I0 201 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 OR52N4Q8NGI2 321 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 OR5H6Q8NGV6 325 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 LIN7BQ9HAP6 207 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 TBCCD1Q9NVR7 557 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 IGHV1-18A0A0C4DH31 117 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 J3QRK9 145 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 OCMP0CE72 109 aaPredicted RBP23.16■■□□□ 1.3
MSX1-201ENST00000382723 CCKARP32238 428 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 ZNF846Q147U1 533 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 SPATA46Q5T0L3 261 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 CCDC190Q86UF4 302 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 PP6455Q8WZ26 134 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 ABRACLQ9P1F3 81 aa23.16■■□□□ 1.3
MSX1-201ENST00000382723 C16orf97H3BN30 126 aa23.15■■□□□ 1.3
MSX1-201ENST00000382723 IGLV1-44P01699 117 aa23.15■■□□□ 1.3
MSX1-201ENST00000382723 LGALS14Q8TCE9 139 aa23.15■■□□□ 1.3
MSX1-201ENST00000382723 C10orf35Q96D05 121 aa23.15■■□□□ 1.3
MSX1-201ENST00000382723 CCDC120Q96HB5 630 aa23.15■■□□□ 1.3
MSX1-201ENST00000382723 REPIN1Q9BWE0 567 aaKnown RBP23.15■■□□□ 1.3
MSX1-201ENST00000382723 DHRS7CA6NNS2 312 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 MADCAM1Q13477 382 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 P2RY14Q15391 338 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 OR8B8Q15620 311 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 SPANXN2Q5MJ10 180 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 OR5AS1Q8N127 324 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 NKAIN3Q8N8D7 197 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 OR5L1Q8NGL2 311 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 NPRL2Q8WTW4 380 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 DIRAS2Q96HU8 199 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 SPACA5Q96QH8 159 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 WDR12Q9GZL7 423 aaKnown RBP23.14■■□□□ 1.3
MSX1-201ENST00000382723 CHST5Q9GZS9 411 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 STEAP1Q9UHE8 339 aa23.14■■□□□ 1.3
MSX1-201ENST00000382723 IGKV1-9A0A0C4DH69 117 aa23.14■■□□□ 1.29
MSX1-201ENST00000382723 M0R1B8 84 aa23.14■■□□□ 1.29
MSX1-201ENST00000382723 SMPD2O60906 423 aa23.14■■□□□ 1.29
MSX1-201ENST00000382723 UBE2V2Q15819 145 aa23.14■■□□□ 1.29
MSX1-201ENST00000382723 RAB11BQ15907 218 aa23.14■■□□□ 1.29
MSX1-201ENST00000382723 C22orf34Q6ZV56 151 aa23.14■■□□□ 1.29
MSX1-201ENST00000382723 WDFY2Q96P53 400 aa23.14■■□□□ 1.29
MSX1-201ENST00000382723 GPR173Q9NS66 373 aa23.14■■□□□ 1.29
MSX1-201ENST00000382723 FAM25AB3EWG3 89 aa23.13■■□□□ 1.29
MSX1-201ENST00000382723 FAM25CB3EWG5 89 aa23.13■■□□□ 1.29
MSX1-201ENST00000382723 FAM25GB3EWG6 89 aa23.13■■□□□ 1.29
MSX1-201ENST00000382723 ERCC1P07992 297 aaPredicted RBP23.13■■□□□ 1.29
MSX1-201ENST00000382723 HCKP08631 526 aa23.13■■□□□ 1.29
MSX1-201ENST00000382723 FAM169BQ8N8A8 192 aa23.13■■□□□ 1.29
MSX1-201ENST00000382723 NPAP1Q9NZP6 1156 aa23.13■■□□□ 1.29
MSX1-201ENST00000382723 GGT3PA6NGU5 568 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 SLC17A2O00624 439 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 ATXN7O15265 892 aaPredicted RBP23.12■■□□□ 1.29
MSX1-201ENST00000382723 ELK1P19419 428 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 OR56B2PQ8NGI1 322 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 POLEQ07864 2286 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 KALRNO60229 2985 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 MAGEB3O15480 346 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 ZNF35P13682 527 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 CHRNB4P30926 498 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 UCP2P55851 309 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 ERVS71-1P61550 626 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 PPP1CBP62140 327 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 ADORA2A-AS1P86434 159 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 DYNC1I2Q13409 638 aaKnown RBP23.12■■□□□ 1.29
MSX1-201ENST00000382723 UTS2BQ765I0 119 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 RNF144BQ7Z419 303 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 PRR7Q8TB68 274 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 PPP1R3EQ9H7J1 279 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 COQ3Q9NZJ6 369 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 OR5V1Q9UGF6 321 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 SPATA2Q9UM82 520 aa23.12■■□□□ 1.29
MSX1-201ENST00000382723 FAM90A27PA6NNH2 459 aa23.11■■□□□ 1.29
MSX1-201ENST00000382723 EIF4EP06730 217 aaKnown RBP23.11■■□□□ 1.29
MSX1-201ENST00000382723 HTR2CP28335 458 aa23.11■■□□□ 1.29
MSX1-201ENST00000382723 CNIH2Q6PI25 160 aa23.11■■□□□ 1.29
MSX1-201ENST00000382723 OR51D1Q8NGF3 324 aa23.11■■□□□ 1.29
MSX1-201ENST00000382723 FOXRED1Q96CU9 486 aaPredicted RBP23.11■■□□□ 1.29
MSX1-201ENST00000382723 MOV10Q9HCE1 1003 aaKnown RBP23.11■■□□□ 1.29
MSX1-201ENST00000382723 ADAM30Q9UKF2 790 aa23.11■■□□□ 1.29
MSX1-201ENST00000382723 RHBDD3Q9Y3P4 386 aa23.11■■□□□ 1.29
MSX1-201ENST00000382723 COL6A6A6NMZ7 2263 aa23.11■■□□□ 1.29
MSX1-201ENST00000382723 IGHV2OR16-5A0A0B4J2B6 119 aa23.1■■□□□ 1.29
MSX1-201ENST00000382723 GMDSO60547 372 aa23.1■■□□□ 1.29
MSX1-201ENST00000382723 ZNF93P35789 620 aaPredicted RBP23.1■■□□□ 1.29
MSX1-201ENST00000382723 IGFBP7Q16270 282 aa23.1■■□□□ 1.29
MSX1-201ENST00000382723 CLVS2Q5SYC1 327 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms