RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 FBXO8Q9NRD0 319 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 C8orf17Q9NRJ1 99 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF835Q9Y2P0 537 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 KIF27Q86VH2 1401 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 TSPOAP1O95153 1857 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 IGKV1-27A0A075B6S5 117 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TMEM150BA6NC51 233 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 H3BN98 237 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TRDMT1O14717 391 aaKnown RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 GLSO94925 669 aaPredicted RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TGM6O95932 706 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 PTTG1O95997 202 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 CCNE2O96020 404 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 HLA-DQB1P01920 261 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF688P0C7X2 276 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 HTR1DP28221 377 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 CXCL12P48061 93 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 PAFAH1B2P68402 229 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 MOBPQ13875 183 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 OR2T5Q6IEZ7 315 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 LINC00336Q6ZUF6 198 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 LINC00523Q86TU6 105 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TMEM104Q8NE00 496 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 FBXO36Q8NEA4 188 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 OR1J4Q8NGS1 313 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 OR2T29Q8NH02 315 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 LILRB4Q8NHJ6 448 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 LINC01560Q8TB33 94 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 ASZ1Q8WWH4 475 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 ESR2Q92731 530 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 RCN3Q96D15 328 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 RSG1Q9BU20 258 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 REEP1Q9H902 201 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 KPTNQ9Y664 436 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 BRCA1P38398 1863 aaKnown RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TNIKQ9UKE5 1360 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 PTPRTO14522 1441 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TRAV6A0A075B6T7 132 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 A0A1W2PPV4 95 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 C7orf66A4D0T2 115 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 OR5H1A6NKK0 313 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 HACD1B0YJ81 288 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF701M0R085 212 aaPredicted RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TNFRSF11BO00300 401 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 BET1O15155 118 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 RAD1O60671 282 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 CD5P06127 495 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 C1GALT1C1LP0DN25 315 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 ME2P23368 584 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 UBE2E1P51965 193 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 CLDN6P56747 220 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 OR2B8PP59922 312 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 SIGLEC14Q08ET2 396 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 CDC20Q12834 499 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 PNOCQ13519 176 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 RNASE13Q5GAN3 156 aaKnown RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 RTL4Q6ZR62 310 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 SHISA6Q6ZSJ9 500 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 MDP1Q86V88 176 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 H1FOOQ8IZA3 346 aaPredicted RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF709Q8N972 641 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 WDR31Q8NA23 367 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 NECAP1Q8NC96 275 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 C19orf18Q8NEA5 215 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TTLQ8NG68 377 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 OR51L1Q8NGJ5 315 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 RXFP4Q8TDU9 374 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TFGQ92734 400 aaPredicted RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TOP1MTQ969P6 601 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 OR10C1Q96KK4 312 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 UBE2E2Q96LR5 201 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 C18orf15Q96N68 181 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 CDX2Q99626 313 aaPredicted RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 RNF5Q99942 180 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 TIMM29Q9BSF4 260 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 FANCEQ9HB96 536 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 FBXO6Q9NRD1 293 aaPredicted RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 RBFOX1Q9NWB1 397 aaKnown RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 CHTOPQ9Y3Y2 248 aaKnown RBP1.19□□□□□ -2.22
VPS13A-206ENST00000376646 DOCK8Q8NF50 2099 aa1.19□□□□□ -2.22
VPS13A-206ENST00000376646 A0A1B0GUH1 482 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 COLCA2A8K830 154 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 CENPXA8MT69 81 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 EIF1BO60739 113 aaKnown RBP1.18□□□□□ -2.22
VPS13A-206ENST00000376646 CTNSO60931 367 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 MPZL1O95297 269 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 OTCP00480 354 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 IGLV3-25P01717 112 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 KLK1P06870 262 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 CRYGCP07315 174 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 STAG3L2P0CL84 134 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 EIF1P41567 113 aaKnown RBP1.18□□□□□ -2.22
VPS13A-206ENST00000376646 PITPNAQ00169 270 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 PPIDQ08752 370 aaKnown RBP1.18□□□□□ -2.22
VPS13A-206ENST00000376646 CAVIN4Q5BKX8 364 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 AP1ARQ63HQ0 302 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF880Q6PDB4 577 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 OPN5Q6U736 354 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 SLC35D2Q76EJ3 337 aa1.18□□□□□ -2.22
VPS13A-206ENST00000376646 OR2W3Q7Z3T1 314 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms