RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 BLKP51451 505 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 TMEM50BP56557 158 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 HYAL1Q12794 435 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 RBM39Q14498 530 aaKnown RBP14.51□□□□□ -0.09
SDC4-201ENST00000372733 ARRDC1Q8N5I2 433 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 NUBPLQ8TB37 319 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 SFT2D1Q8WV19 159 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 ARHGAP5-AS1Q96IT6 56 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 RTBDNQ9BSG5 229 aaPredicted RBP14.51□□□□□ -0.09
SDC4-201ENST00000372733 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.51□□□□□ -0.09
SDC4-201ENST00000372733 GSKIPQ9P0R6 139 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 FBLN5Q9UBX5 448 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 PQLC2LA1A4F0 135 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 H3BML4 177 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 SERPINA5P05154 406 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 GSTP1P09211 210 aaKnown RBP14.5□□□□□ -0.09
SDC4-201ENST00000372733 LYL1P12980 280 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 AMY2BP19961 511 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 ID4P47928 161 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 CAV2P51636 162 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 AKIRIN2Q53H80 203 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 C1orf189Q5VU69 101 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 ETV3LQ6ZN32 361 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 SHISA6Q6ZSJ9 500 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 ABHD12BQ7Z5M8 362 aaPredicted RBP14.5□□□□□ -0.09
SDC4-201ENST00000372733 NAA40Q86UY6 237 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 OR1N1Q8NGS0 311 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 OR5H2Q8NGV7 314 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 LMX1AQ8TE12 382 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 DAZLQ92904 295 aaKnown RBP14.5□□□□□ -0.09
SDC4-201ENST00000372733 NUDT16L1Q9BRJ7 211 aaKnown RBP14.5□□□□□ -0.09
SDC4-201ENST00000372733 TMEM59Q9BXS4 323 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 LAMA1P25391 3075 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 CSTBP04080 98 aaKnown RBP14.5□□□□□ -0.09
SDC4-201ENST00000372733 CHRM2P08172 466 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 HOXB5P09067 269 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 FPR2P25090 351 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 ZNF441Q8N8Z8 693 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 POC1AQ8NBT0 407 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 DMBX1Q8NFW5 382 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 FAM71F1Q96KD3 344 aaPredicted RBP14.5□□□□□ -0.09
SDC4-201ENST00000372733 SMIM8Q96KF7 97 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 SLC26A1Q9H2B4 701 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 CHST11Q9NPF2 352 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 POLR1DQ9Y2S0 133 aa14.5□□□□□ -0.09
SDC4-201ENST00000372733 IGHV3-20A0A0C4DH32 117 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 LILRA5A6NI73 299 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 C9JQL5 133 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 CRTAPO75718 401 aaPredicted RBP14.49□□□□□ -0.09
SDC4-201ENST00000372733 GLRA1P23415 457 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 ZP4Q12836 540 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 ARFRP1Q13795 201 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 LILRB1Q8NHL6 650 aaPredicted RBP14.49□□□□□ -0.09
SDC4-201ENST00000372733 TMEM106CQ9BVX2 250 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 PCDHGA1Q9Y5H4 931 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 CEACAM18A8MTB9 384 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 RNASEK-C17orf49H0YIS7 233 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 HEXAP06865 529 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 HCKP08631 526 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 CCR5P51681 352 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 DLX2Q07687 328 aaPredicted RBP14.49□□□□□ -0.09
SDC4-201ENST00000372733 ACTBL2Q562R1 376 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 AADACL3Q5VUY0 350 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 C5orf46Q6UWT4 87 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 PEG10Q86TG7 708 aaKnown RBP14.49□□□□□ -0.09
SDC4-201ENST00000372733 THAP3Q8WTV1 239 aaPredicted RBP14.49□□□□□ -0.09
SDC4-201ENST00000372733 C2orf50Q96LR7 162 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 MESP1Q9BRJ9 268 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 CRB3Q9BUF7 120 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 ST6GALNAC5Q9BVH7 336 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 VN1R1Q9GZP7 353 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 CD207Q9UJ71 328 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 MMP17Q9ULZ9 603 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 SRPK3Q9UPE1 567 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 LHFPL6Q9Y693 200 aa14.49□□□□□ -0.09
SDC4-201ENST00000372733 COL5A1P20908 1838 aaPredicted RBP14.49□□□□□ -0.09
SDC4-201ENST00000372733 H3BMH7 237 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 MFNGO00587 321 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 SFTPBP07988 381 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 FBLP22087 321 aaKnown RBP14.48□□□□□ -0.09
SDC4-201ENST00000372733 CD80P33681 288 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 AKR1C3P42330 323 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 FBXW4P57775 412 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 FOXF1Q12946 379 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 PEA15Q15121 130 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 OR8B12Q8NGG6 310 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 MFSD8Q8NHS3 518 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 TMEM234Q8WY98 164 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 CDCA3Q99618 268 aaPredicted RBP14.48□□□□□ -0.09
SDC4-201ENST00000372733 SEC61A2Q9H9S3 476 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 TAF9BQ9HBM6 251 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 GPR84Q9NQS5 396 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 ZNF319Q9P2F9 582 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 SUSD2Q9UGT4 822 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 RPS2P15880 293 aaKnown RBP14.48□□□□□ -0.09
SDC4-201ENST00000372733 CDAP32320 146 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 P2RY4P51582 365 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 OR2A2Q6IF42 318 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 DEFB119Q8N690 84 aa14.48□□□□□ -0.09
SDC4-201ENST00000372733 OR5D18Q8NGL1 313 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms