RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TIPRLO75663 272 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 ZNF682O95780 498 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 HLA-DQA2P01906 255 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 DDOSTP39656 456 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 NAA10P41227 235 aaPredicted RBP11.31□□□□□ -0.6
VPS29-201ENST00000360579 IKZF1Q13422 519 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 BLMHQ13867 455 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 MAPRE2Q15555 327 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 AANATQ16613 207 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 SNAI3Q3KNW1 292 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 SMARCD3Q6STE5 483 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 DRAM2Q6UX65 266 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 FKBP9P1Q75LS8 142 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 FAM216BQ8N7L0 139 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 OR51G2Q8NGK0 314 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 OR4C15Q8NGM1 316 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 OR2AE1Q8NHA4 323 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 LRRC29Q8WV35 223 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 PHF21AQ96BD5 680 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 ERMAPQ96PL5 475 aaPredicted RBP11.31□□□□□ -0.6
VPS29-201ENST00000360579 SSX3Q99909 188 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 NPFFR1Q9GZQ6 430 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 DNTTIP1Q9H147 329 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 DNAJB11Q9UBS4 358 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 SF3B6Q9Y3B4 125 aaKnown RBP11.31□□□□□ -0.6
VPS29-201ENST00000360579 A0A0G2JND7 137 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 A0A1B0GW55 424 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 A0A1W2PRQ8 180 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 UNC119BA6NIH7 251 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 FBXO24O75426 580 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 H1F0P07305 194 aaKnown RBP11.3□□□□□ -0.6
VPS29-201ENST00000360579 DUX4L2P0CJ85 424 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 DUX4L3P0CJ86 424 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 DUX4L4P0CJ87 422 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 DUX4L5P0CJ88 424 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 DUX4L6P0CJ89 424 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 DUX4L7P0CJ90 424 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 VSIG10L2P0DP72 767 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 TROVE2P10155 538 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS29-201ENST00000360579 OMPP47874 163 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 PRB3Q04118 309 aaPredicted RBP11.3□□□□□ -0.6
VPS29-201ENST00000360579 KLRD1Q13241 179 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 DGCR6Q14129 220 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 NSUN5P1Q3KNT7 163 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 GLYATL3Q5SZD4 288 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 ATPAF1Q5TC12 328 aaPredicted RBP11.3□□□□□ -0.6
VPS29-201ENST00000360579 DUX4L9Q6RFH8 374 aaPredicted RBP11.3□□□□□ -0.6
VPS29-201ENST00000360579 DPY19L4Q7Z388 723 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 ZBTB46Q86UZ6 589 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 FGFRL1Q8N441 504 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 OR56B2PQ8NGI1 322 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 H1FXQ92522 213 aaKnown RBP11.3□□□□□ -0.6
VPS29-201ENST00000360579 R3HDM4Q96D70 268 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 NMNAT3Q96T66 252 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 RPRD1BQ9NQG5 326 aaKnown RBP11.3□□□□□ -0.6
VPS29-201ENST00000360579 DUX4Q9UBX2 424 aa11.3□□□□□ -0.6
VPS29-201ENST00000360579 NKX6-3A6NJ46 265 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 ACOT8O14734 319 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 ARPC3O15145 178 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 XRCC2O43543 280 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 ZNF823P16415 610 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 OTX1P32242 354 aaPredicted RBP11.29□□□□□ -0.6
VPS29-201ENST00000360579 TGM4P49221 684 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 GSK3BP49841 420 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 FXYD6P3P58550 94 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 LY6EQ16553 131 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 LRRC75BQ2VPJ9 315 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 CBLL1Q75N03 491 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 NDUFA11Q86Y39 141 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 LNX2Q8N448 690 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 PNKDQ8N490 385 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 OR1M1Q8NGA1 313 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 OR5D13Q8NGL4 314 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 OR9Q1Q8NGQ5 310 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 MAP6Q96JE9 813 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 HSH2DQ96JZ2 352 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 MEGF9Q9H1U4 602 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 FAM32AQ9Y421 112 aaKnown RBP11.29□□□□□ -0.6
VPS29-201ENST00000360579 ENPP4Q9Y6X5 453 aa11.29□□□□□ -0.6
VPS29-201ENST00000360579 A0A1W2PQ09 198 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 PAICSP22234 425 aaKnown RBP11.28□□□□□ -0.6
VPS29-201ENST00000360579 NOS3P29474 1203 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 SLC6A6P31641 620 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 SLC7A2P52569 658 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 DLX1P56177 255 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 FGD3Q5JSP0 725 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 FOXB2Q5VYV0 432 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 STUMQ69YW2 141 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 WDR82Q6UXN9 313 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 ARPINQ7Z6K5 226 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 C11orf53Q8IXP5 236 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 OR4K13Q8NH42 304 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 FANK1Q8TC84 345 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 ITPKCQ96DU7 683 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 MED30Q96HR3 178 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 NSRP1Q9H0G5 558 aaKnown RBP11.28□□□□□ -0.6
VPS29-201ENST00000360579 MMP28Q9H239 520 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 INTS9Q9NV88 658 aaKnown RBP11.28□□□□□ -0.6
VPS29-201ENST00000360579 CAPN7Q9Y6W3 813 aa11.28□□□□□ -0.6
VPS29-201ENST00000360579 DNAH9Q9NYC9 4486 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms