RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OR7G2Q8NG99 324 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF675Q8TD23 568 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 WACQ9BTA9 647 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 IKZF5Q9H5V7 419 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 WDR76Q9H967 626 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 PDFQ9HBH1 243 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 SLC7A10Q9NS82 523 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 RPS17P08708 135 aaKnown RBP7.41□□□□□ -1.22
HMGB1-203ENST00000341423 FOSL1P15407 271 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 GLRXP35754 106 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 PLET1Q6UQ28 207 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 DRAM2Q6UX65 266 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 RBPMSQ93062 196 aaKnown RBP7.41□□□□□ -1.22
HMGB1-203ENST00000341423 SLC38A1Q9H2H9 487 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ASCL3Q9NQ33 180 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 GSKIPQ9P0R6 139 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 FBXO7Q9Y3I1 522 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 POMT1Q9Y6A1 747 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 H0Y980 276 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 CBFA2T3O75081 653 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 IGLV3-25P01717 112 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 MSMBP08118 114 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 RGNQ15493 299 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 UNC50Q53HI1 259 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 KRBOX4Q5JUW0 171 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 MS4A15Q8N5U1 240 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 LIN7BQ9HAP6 207 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ROS1P08922 2347 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 CLN5O75503 358 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 CT45A10P0DMU9 189 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ZP3P21754 424 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 PRDX4Q13162 271 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ZSCAN26Q16670 478 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 C1orf220Q5T0J3 134 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF626Q68DY1 528 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 DPY19L2P2Q6ZN68 376 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ADAD2Q8NCV1 583 aaKnown RBP7.41□□□□□ -1.22
HMGB1-203ENST00000341423 OR5D18Q8NGL1 313 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ITLN1Q8WWA0 313 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 PELI1Q96FA3 418 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 OR51I2Q9H344 312 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 PLEKHF2Q9H8W4 249 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 SMPD3Q9NY59 655 aaPredicted RBP7.41□□□□□ -1.22
HMGB1-203ENST00000341423 OSGIN1Q9UJX0 560 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 RPH3ALQ9UNE2 315 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 THADAQ6YHU6 1953 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 IFNA7P01567 189 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 PJVKQ0ZLH3 352 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 PIN1Q13526 163 aaPredicted RBP7.41□□□□□ -1.22
HMGB1-203ENST00000341423 TNXAQ16473 311 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 RAB6CQ53S08 254 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ACSM6Q6P461 480 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 C6orf89Q6UWU4 347 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 H2BFWTQ7Z2G1 175 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ISCA2Q86U28 154 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 CALHM3Q86XJ0 350 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 OR13J1Q8NGT2 312 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 HPSE2Q8WWQ2 592 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF714Q96N38 554 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 OR2V2Q96R30 315 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 SDF2Q99470 211 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 RAB6CQ9H0N0 254 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 OR52D1Q9H346 318 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 ZFP57Q9NU63 452 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 CCL27Q9Y4X3 112 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 HMX3A6NHT5 357 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 P2RX6O15547 441 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 MED6O75586 246 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 NCK1P16333 377 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 RBM34P42696 430 aaKnown RBP7.4□□□□□ -1.22
HMGB1-203ENST00000341423 THBS3P49746 956 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 RAG2P55895 527 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF385CQ66K41 422 aaPredicted RBP7.4□□□□□ -1.22
HMGB1-203ENST00000341423 DGAT2L7PQ6IED9 249 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 SCARF2Q96GP6 870 aaPredicted RBP7.4□□□□□ -1.22
HMGB1-203ENST00000341423 ABHD6Q9BV23 337 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 PRO3102Q9H379 93 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 PLEKHA2Q9HB19 425 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 MYH3P11055 1940 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 IL18Q14116 193 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 SLC25A26Q70HW3 274 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 C12orf45Q8N5I9 185 aaPredicted RBP7.4□□□□□ -1.22
HMGB1-203ENST00000341423 ZFP62Q8NB50 900 aaPredicted RBP7.4□□□□□ -1.22
HMGB1-203ENST00000341423 ST6GALNAC5Q9BVH7 336 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 ENPP4Q9Y6X5 453 aa7.4□□□□□ -1.22
HMGB1-203ENST00000341423 GPR137BO60478 399 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 SNRNP70P08621 437 aaKnown RBP7.4□□□□□ -1.23
HMGB1-203ENST00000341423 GAAP10253 952 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 CCR9P51686 369 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 MXD1Q05195 221 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 ARIH2OSQ8N7S6 290 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 KCNIP2Q9NS61 270 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 SLC17A7Q9P2U7 560 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 GPR55Q9Y2T6 319 aaPredicted RBP7.4□□□□□ -1.23
HMGB1-203ENST00000341423 MEIS3P1A6NDR6 274 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 AIPO00170 330 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 WNT9BO14905 357 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 GNG7O60262 68 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 NAT2P11245 290 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 HTR6P50406 440 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms