RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CACNG2Q9Y698 323 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 ACACAQ13085 2346 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 CIB4A0PJX0 185 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 C5orf49A4QMS7 147 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 EDN3P14138 238 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 STOMP27105 288 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 GDNFP39905 211 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 MRPS10P82664 201 aaKnown RBP11.64□□□□□ -0.55
HMGB1-202ENST00000339872 PLP2Q04941 152 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 PMPCAQ10713 525 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 UBE2V2Q15819 145 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 TBR1Q16650 682 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 ANGPTL5Q86XS5 388 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 BCL2L2Q92843 193 aaPredicted RBP11.64□□□□□ -0.55
HMGB1-202ENST00000339872 GPR137Q96N19 417 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 C1QTNF5Q9BXJ0 243 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 ZNF391Q9UJN7 358 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 BOD1L1Q8NFC6 3051 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 PRRC2CQ9Y520 2896 aaKnown RBP11.63□□□□□ -0.55
HMGB1-202ENST00000339872 TRAV18A0A075B6X5 111 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 DHRS7CA6NNS2 312 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 XRCC2O43543 280 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 ORC5O43913 435 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 BPNT1O95861 308 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 ALDOBP05062 364 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 COX5BP10606 129 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 OR3A4PP47883 348 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 ZNF92Q03936 586 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 CARTPTQ16568 116 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 GSG1Q2KHT4 349 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 TBRG1Q3YBR2 411 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 OR2A2Q6IF42 318 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 VWA1Q6PCB0 445 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 UTS2BQ765I0 119 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 NANOS1Q8WY41 292 aaKnown RBP11.63□□□□□ -0.55
HMGB1-202ENST00000339872 ITFG2Q969R8 447 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 FAM46BQ96A09 425 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 ZC3HAV1LQ96H79 300 aaKnown RBP11.63□□□□□ -0.55
HMGB1-202ENST00000339872 RGCCQ9H4X1 137 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 NLKQ9UBE8 527 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 MRPS28Q9Y2Q9 187 aaKnown RBP11.63□□□□□ -0.55
HMGB1-202ENST00000339872 GTF3C1Q12789 2109 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 SVILO95425 2214 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 MEIOCA2RUB1 952 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 RAD51DO75771 328 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 IGHV1-2P23083 117 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 KIR2DL2P43627 348 aaPredicted RBP11.63□□□□□ -0.55
HMGB1-202ENST00000339872 RIPPLY1Q0D2K3 151 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 NSUN5P2Q63ZY6 315 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 PLET1Q6UQ28 207 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 FAM180AQ6UWF9 173 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 CDH26Q8IXH8 852 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 ZNF101Q8IZC7 436 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 AKAP1Q92667 903 aaKnown RBP eCLIP11.63□□□□□ -0.55
HMGB1-202ENST00000339872 PIGTQ969N2 578 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 PTX4Q96A99 478 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 GPR173Q9NS66 373 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 DKK4Q9UBT3 224 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 KLK11Q9UBX7 282 aa11.63□□□□□ -0.55
HMGB1-202ENST00000339872 hCG_38984A0A1B0GV85 526 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 LYZL6O75951 148 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 TPPPO94811 219 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 TPOP07202 933 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 FAM157BP0CG42 384 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 VSIG8P0DPA2 414 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 PRF1P14222 555 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 RAB6AP20340 208 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 GSK3AP49840 483 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 PER3P56645 1201 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 FAM3AP98173 230 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 FOXF2Q12947 444 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 UNC119Q13432 240 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 TNK1Q13470 666 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 KISS1Q15726 138 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 GLIPR1L1Q6UWM5 242 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 Q6ZT83 130 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 DPPA2Q7Z7J5 298 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 ZNF554Q86TJ5 538 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 ZNF584Q8IVC4 421 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 OR5D18Q8NGL1 313 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 OR6K3Q8NGY3 331 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 SSC4DQ8WTU2 575 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 MS4A3Q96HJ5 214 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 MRPL15Q9P015 296 aaKnown RBP11.62□□□□□ -0.55
HMGB1-202ENST00000339872 RAB22AQ9UL26 194 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 DMXL2Q8TDJ6 3036 aa11.62□□□□□ -0.55
HMGB1-202ENST00000339872 CENPXA8MT69 81 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 HNRNPCP07910 306 aaKnown RBP eCLIP11.61□□□□□ -0.554e-6■□□□□ 10.4
HMGB1-202ENST00000339872 HOXD11P31277 338 aaPredicted RBP11.61□□□□□ -0.55
HMGB1-202ENST00000339872 QRFPP83859 136 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 TGFBR3Q03167 851 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 KLF9Q13886 244 aaPredicted RBP11.61□□□□□ -0.55
HMGB1-202ENST00000339872 MYO7BQ6PIF6 2116 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 COLCA1Q6ZS62 124 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 MDP1Q86V88 176 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 PAQR4Q8N4S7 273 aaPredicted RBP11.61□□□□□ -0.55
HMGB1-202ENST00000339872 PNLDC1Q8NA58 520 aaKnown RBP11.61□□□□□ -0.55
HMGB1-202ENST00000339872 ACBD4Q8NC06 268 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 POM121L2Q96KW2 1035 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 NEURL2Q9BR09 285 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms