RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 LMAN1LQ9HAT1 526 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ASH2LQ9UBL3 628 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 CDC14CA4D256 554 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 STMND1H3BQB6 276 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 NOVA1P51513 510 aaKnown RBP9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 NDUFA6P56556 154 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 STK11Q15831 433 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 SIGLECL1Q8N7X8 197 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 NOXO1Q8NFA2 376 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 OR4S1Q8NGB4 309 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 PRR14Q9BWN1 585 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 OR6C68A6NDL8 312 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 RFLNAQ6ZTI6 216 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 PELI1Q96FA3 418 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 WDR90Q96KV7 1748 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 FRMPD3Q5JV73 1810 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 PLXNA3P51805 1871 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 ZFP92A6NM28 416 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 RNASEK-C17orf49H0YIS7 233 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 SULT1A3P0DMM9 295 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 SULT1A4P0DMN0 295 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 KIR2DS2P43631 304 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 B4GALNT1Q00973 533 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 CMTM2Q8TAZ6 248 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 YARS2Q9Y2Z4 477 aaKnown RBP9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 OR5H8P0DN80 308 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 SPNP16150 400 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 BHLHA9Q7RTU4 235 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 M1APQ8TC57 530 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 CXCL16Q9H2A7 254 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 CGGBP1Q9UFW8 167 aaPredicted RBP9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 LTBP1Q14766 1721 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 ANKRD20A5PA0PJZ0 165 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 APOA2P02652 100 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 PHLDA2Q53GA4 152 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF687Q8N1G0 1237 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 RBMXL3Q8N7X1 1067 aaKnown RBP9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 IER2Q9BTL4 223 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 WWTR1Q9GZV5 400 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 SIRT7Q9NRC8 400 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 SPTA1P02549 2419 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 A0A0U1RQK1 487 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF727A8MUV8 499 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 BOD1Q96IK1 185 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 EGLN1Q9GZT9 426 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 OR51B4Q9Y5P0 310 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 A0A1B0GTL3 188 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 DCTN6O00399 190 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 PJVKQ0ZLH3 352 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 PHYHD1Q5SRE7 291 aa9.29□□□□□ -0.92
CCDC88A-202ENST00000336838 AKR7A2O43488 359 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 TIMM8AO60220 97 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 PDGFBP01127 241 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 OPN1MWP04001 364 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 OPN1MW2P0DN77 364 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 OPN1MW3P0DN78 364 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 MRM1Q6IN84 353 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 TMEM217Q8N7C4 229 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 RTN4IP1Q8WWV3 396 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 SMIM7Q9BQ49 75 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 IGFBP7Q16270 282 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF787Q6DD87 383 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 OR2A1Q8NGT9 310 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 V9GYS6 101 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 HEYLQ9NQ87 328 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 TM7SF3Q9NS93 570 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 CA14Q9ULX7 337 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 SLCO1B1Q9Y6L6 691 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 DOK4Q8TEW6 326 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 NUDCD2Q8WVJ2 157 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 APOBEC3DQ96AK3 386 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 REEP6Q96HR9 211 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 ANGPTL7O43827 346 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 DHRS3O75911 302 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 ZFPL1O95159 310 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 CHRNB4P30926 498 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 RAB35Q15286 201 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 SLC25A35Q3KQZ1 300 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 DNAJA3Q96EY1 480 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 FGF22Q9HCT0 170 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 MANBALQ9NQG1 85 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 MMP17Q9ULZ9 603 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 SNRNP200O75643 2136 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 ATF1P18846 271 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 WDR73Q6P4I2 378 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 TMEM71Q6P5X7 295 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 RHOUQ7L0Q8 258 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 C9orf62Q8N4C0 152 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 LHFPL5Q8TAF8 219 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 SPPL3Q8TCT6 385 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 SLC6A13Q9NSD5 602 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 DNAJB12Q9NXW2 375 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 CTSFQ9UBX1 484 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 MBTPS2O43462 519 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 SLC2A10O95528 541 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 FGF7P21781 194 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 LILRA3Q8N6C8 439 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 OR10P1Q8NGE3 313 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 OR6C1Q96RD1 312 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 GDF2Q9UK05 429 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms