RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SFRP5Q5T4F7 317 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 FAM57BQ71RH2 274 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 CEACAM19Q7Z692 300 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 CATSPERDQ86XM0 798 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ABHD4Q8TB40 342 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 RNF166Q96A37 237 aaPredicted RBP8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ZNF799Q96GE5 643 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 SRRQ9GZT4 340 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ZNF224Q9NZL3 707 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 NUP50Q9UKX7 468 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 CMAHPQ9Y471 501 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 MYO7BQ6PIF6 2116 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 A0A1W2PPK0 400 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ZNF503-AS2A6NEH8 195 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 OR4C45A6NMZ5 311 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 MSTNO14793 375 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 SYNGR3O43761 229 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 NDUFS6O75380 124 aaKnown RBP8.74□□□□□ -1.01
HMGB3-201ENST00000325307 SERPINA3P01011 423 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 APEX1P27695 318 aaKnown RBP8.74□□□□□ -1.01
HMGB3-201ENST00000325307 TNK1Q13470 666 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 GABRA6Q16445 453 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 TMEM95Q3KNT9 176 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ZFP69Q49AA0 526 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ACSM3Q53FZ2 586 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 FAM27D1Q5T7N8 215 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ZNF474Q6S9Z5 364 aaPredicted RBP8.74□□□□□ -1.01
HMGB3-201ENST00000325307 FJX1Q86VR8 437 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 OR8H1Q8NGG4 311 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 TSEN15Q8WW01 171 aaKnown RBP8.74□□□□□ -1.01
HMGB3-201ENST00000325307 PGAM5Q96HS1 289 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 PBOV1Q9GZY1 135 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ZNF629Q9UEG4 869 aaPredicted RBP8.74□□□□□ -1.01
HMGB3-201ENST00000325307 SHANK1Q9Y566 2161 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 ATXN7O15265 892 aaPredicted RBP8.74□□□□□ -1.01
HMGB3-201ENST00000325307 APOC1P02654 83 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 COX5AP20674 150 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 SOX2P48431 317 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 MMP16P51512 607 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 SPANXN2Q5MJ10 180 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 FDX2Q6P4F2 183 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 BHLHA15Q7RTS1 189 aaPredicted RBP8.74□□□□□ -1.01
HMGB3-201ENST00000325307 CCDC32Q9BV29 185 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 C1QTNF6Q9BXI9 259 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 PIGMQ9H3S5 423 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 FAM206AQ9NX38 181 aa8.74□□□□□ -1.01
HMGB3-201ENST00000325307 OR6C6A6NF89 314 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 CENPXA8MT69 81 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 RGS5O15539 181 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 DCTDP32321 178 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 CCR9P51686 369 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 DPPA2Q7Z7J5 298 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 NAA40Q86UY6 237 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 MDP1Q86V88 176 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 OR14A2Q96R54 314 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 NOX3Q9HBY0 568 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 G6PC2Q9NQR9 355 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 EIF3KQ9UBQ5 218 aaKnown RBP8.73□□□□□ -1.01
HMGB3-201ENST00000325307 P2RY10O00398 339 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 LCATP04180 440 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 CCL2P13500 99 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 CARTPTQ16568 116 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 C21orf62-AS1Q17RA5 79 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 NOXA1Q86UR1 476 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 CPEB3Q8NE35 698 aaKnown RBP8.73□□□□□ -1.01
HMGB3-201ENST00000325307 PRR7Q8TB68 274 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 ZFAND1Q8TCF1 268 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 DMRTA2Q96SC8 542 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 PLSCR3Q9NRY6 295 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 KALRNO60229 2985 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 C5orf49A4QMS7 147 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 ZNF780AO75290 641 aaPredicted RBP8.73□□□□□ -1.01
HMGB3-201ENST00000325307 SRSF10O75494 262 aaKnown RBP8.73□□□□□ -1.01
HMGB3-201ENST00000325307 RPS2P15880 293 aaKnown RBP8.73□□□□□ -1.01
HMGB3-201ENST00000325307 GALP22466 123 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 STOMP27105 288 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 APLNRP35414 380 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 MAGEB1P43366 347 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 TCTE3Q8IZS6 198 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 C1orf162Q8NEQ5 155 aaPredicted RBP8.73□□□□□ -1.01
HMGB3-201ENST00000325307 OR10AC1Q8NH08 325 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 GPR148Q8TDV2 347 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 MS4A3Q96HJ5 214 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 MOB1AQ9H8S9 216 aa8.73□□□□□ -1.01
HMGB3-201ENST00000325307 LOC107986453A0A1B0GWG9 222 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 ACOD1A6NK06 481 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 IDH3GP51553 393 aaPredicted RBP8.72□□□□□ -1.01
HMGB3-201ENST00000325307 ESCO2Q56NI9 601 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 STAC2Q6ZMT1 411 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 MRGPRGQ86SM5 289 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 OR8B12Q8NGG6 310 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 OR51A4Q8NGJ6 313 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 OR51E1Q8TCB6 317 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 SOSTQ9BQB4 213 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 NUFIP1Q9UHK0 495 aaKnown RBP8.72□□□□□ -1.01
HMGB3-201ENST00000325307 A0A0G2JK05 382 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 A8MXE2 369 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 AGFG2O95081 481 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 CD1AP06126 327 aa8.72□□□□□ -1.01
HMGB3-201ENST00000325307 UBCP0CG48 685 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms