RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MRPS21P82921 87 aaKnown RBP12.58□□□□□ -0.4
CSPG4-201ENST00000308508 PAQR6Q6TCH4 344 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 OR52N4Q8NGI2 321 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 SLCO4A1Q96BD0 722 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 ATG101Q9BSB4 218 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 PYCARD-AS1I3L0S3 204 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 ELAVL1Q15717 326 aaKnown RBP12.58□□□□□ -0.4
CSPG4-201ENST00000308508 KHDC1LQ5JSQ8 128 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 NXPE3Q969Y0 559 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF346Q9UL40 294 aaKnown RBP12.58□□□□□ -0.4
CSPG4-201ENST00000308508 GATCO43716 136 aaKnown RBP12.58□□□□□ -0.4
CSPG4-201ENST00000308508 OPN1MWP04001 364 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 OPN1MW2P0DN77 364 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 OPN1MW3P0DN78 364 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 AREGP15514 252 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 NTHL1P78549 312 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF385BQ569K4 471 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 OR2W3Q7Z3T1 314 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 ZDHHC23Q8IYP9 409 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 OR8D4Q8NGM9 314 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 PBOV1Q9GZY1 135 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 NALCNQ8IZF0 1738 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 NPPBP16860 134 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 LINC00303Q3SY05 128 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 FGF20Q9NP95 211 aaPredicted RBP12.57□□□□□ -0.4
CSPG4-201ENST00000308508 SLC2A10O95528 541 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 PGA3P0DJD8 388 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 HLXQ14774 488 aaPredicted RBP12.57□□□□□ -0.4
CSPG4-201ENST00000308508 ARRDC3Q96B67 414 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 SDF2Q99470 211 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 TRAPPC4Q9Y296 219 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 MYADML2A6NDP7 307 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 HELTA6NFD8 242 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 ORM1P02763 201 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 BMP5P22003 454 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 ST3GAL6Q9Y274 331 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 SPNP16150 400 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF687Q8N1G0 1237 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 FOXJ3Q9UPW0 622 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 LRRC37A3O60309 1634 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 HTR1DP28221 377 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 JAG1P78504 1218 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 MYPOPQ86VE0 399 aaPredicted RBP12.57□□□□□ -0.4
CSPG4-201ENST00000308508 VRK3Q8IV63 474 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 A0A1B0GX78 115 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 PRSS37A4D1T9 235 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 TUSC1Q2TAM9 212 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 FAM24BQ8N5W8 94 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 EMC6Q9BV81 110 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 KLK11Q9UBX7 282 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 FPR2P25090 351 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 SELENBP1Q13228 472 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 FDX2Q6P4F2 183 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 OSR2Q8N2R0 312 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 MZB1Q8WU39 189 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 RDH5Q92781 318 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 PPT2Q9UMR5 302 aa12.57□□□□□ -0.4
CSPG4-201ENST00000308508 C5orf49A4QMS7 147 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF750Q32MQ0 723 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 AFMIDQ63HM1 303 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 CAMKMTQ7Z624 323 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 CCDC190Q86UF4 302 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 OR5M1Q8NGP8 315 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 TMEM174Q8WUU8 243 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 BADQ92934 168 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 SLC17A5Q9NRA2 495 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 CD207Q9UJ71 328 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 TMED3Q9Y3Q3 217 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 G3V3Y1 287 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 PNRC1Q12796 327 aaPredicted RBP12.56□□□□□ -0.4
CSPG4-201ENST00000308508 POM121Q96HA1 1249 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 P2RY12Q9H244 342 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 KIR3DX1Q9H7L2 352 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 ZFC3H1O60293 1989 aaKnown RBP12.56□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF638Q14966 1978 aaKnown RBP12.56□□□□□ -0.4
CSPG4-201ENST00000308508 COL2A1P02458 1487 aaPredicted RBP12.56□□□□□ -0.4
CSPG4-201ENST00000308508 SCN11AQ9UI33 1791 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 DUXBA0A1W2PPF3 345 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 TGFBR1P36897 503 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 Q3ZCU0 254 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 MRPS2Q9Y399 296 aaKnown RBP12.56□□□□□ -0.4
CSPG4-201ENST00000308508 MMP24Q9Y5R2 645 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 M0QZ24 198 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 RAG2P55895 527 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 SLC26A10Q8NG04 563 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 MAP1LC3CQ9BXW4 147 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 HES4Q9HCC6 221 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 C19orf53Q9UNZ5 99 aaPredicted RBP12.56□□□□□ -0.4
CSPG4-201ENST00000308508 CICQ96RK0 1608 aaPredicted RBP12.56□□□□□ -0.4
CSPG4-201ENST00000308508 DSCR3O14972 297 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 IRS1P35568 1242 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 CD81P60033 236 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 IL10RAQ13651 578 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 C17orf78Q8N4C9 275 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 GPR87Q9BY21 358 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 TMEM9BQ9NQ34 198 aa12.56□□□□□ -0.4
CSPG4-201ENST00000308508 M0R2Z0 102 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 NEURL1O76050 574 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 CST7O76096 145 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 SMIM21Q3B7S5 101 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms