RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 RSPO1Q2MKA7 263 aaPredicted RBP17.65■□□□□ 0.42
VPS53-201ENST00000291074 LIN54Q6MZP7 749 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 SLC23A3Q6PIS1 610 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 ARL6Q9H0F7 186 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 CST11Q9H112 138 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 FBLN5Q9UBX5 448 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 OR2AT4A6NND4 320 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 PMP2P02689 132 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 MPPED2Q15777 294 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 GJC3Q8NFK1 279 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 PRRT1Q99946 306 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 NAA11Q9BSU3 229 aaPredicted RBP17.64■□□□□ 0.41
VPS53-201ENST00000291074 GSX2Q9BZM3 304 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 KCNN3Q9UGI6 736 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 NOP16Q9Y3C1 178 aaKnown RBP17.64■□□□□ 0.41
VPS53-201ENST00000291074 HMSDA8MTL9 139 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 CRTAPO75718 401 aaPredicted RBP17.64■□□□□ 0.41
VPS53-201ENST00000291074 CBR3O75828 277 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 F10P00742 488 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 PRKACBP22694 351 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 CSNK2A1P68400 391 aaPredicted RBP17.64■□□□□ 0.41
VPS53-201ENST00000291074 DEFB123Q8N688 67 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 TMEM59Q9BXS4 323 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 ULBP2Q9BZM5 246 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 SLC2A8Q9NY64 477 aa17.64■□□□□ 0.41
VPS53-201ENST00000291074 TRAV14DV4A0A0A6YYC5 116 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 RAD51DO75771 328 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 NR2C1P13056 603 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 FAHP16930 419 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 C4BPBP20851 252 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 B3GALT5-AS1P59052 145 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 RAB14P61106 215 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 RAC1P63000 192 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 PPP1R1AQ13522 171 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 C1QL2Q7Z5L3 287 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 PIGQQ9BRB3 760 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 FOXD3Q9UJU5 478 aaPredicted RBP17.63■□□□□ 0.41
VPS53-201ENST00000291074 GPR179Q6PRD1 2367 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 NCOR1O75376 2440 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 OR6C65A6NJZ3 312 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 VAMP5O95183 116 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 RFPL3SP0C7P2 107 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 CD34P28906 385 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 AP2S1P53680 142 aaPredicted RBP17.63■□□□□ 0.41
VPS53-201ENST00000291074 TMEM50BP56557 158 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 CRIP3Q6Q6R5 217 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 ALKAL2Q6UX46 152 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 RAB3CQ96E17 227 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 FBXO17Q96EF6 278 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 FN3KRPQ9HA64 309 aa17.63■□□□□ 0.41
VPS53-201ENST00000291074 MYOZ1Q9NP98 299 aaPredicted RBP17.63■□□□□ 0.41
VPS53-201ENST00000291074 CELSR3Q9NYQ7 3312 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 AHCTF1Q8WYP5 2266 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 TCN2P20062 427 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 CTSSP25774 331 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 NTF4P34130 210 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 NHLRC3Q5JS37 347 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 FOXL2NBQ6ZUU3 175 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 TIPARPQ7Z3E1 657 aaKnown RBP17.62■□□□□ 0.41
VPS53-201ENST00000291074 OR2W3Q7Z3T1 314 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 TMEM105Q8N8V8 129 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 SPERTQ8NA61 448 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 ADAD2Q8NCV1 583 aaKnown RBP17.62■□□□□ 0.41
VPS53-201ENST00000291074 OR14L1PQ8NHC6 308 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 KCNG3Q8TAE7 436 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 SSC4DQ8WTU2 575 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 PLEK2Q9NYT0 353 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 TCFL5Q9UL49 500 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 I3L521 148 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 ZNF133P52736 654 aaPredicted RBP17.62■□□□□ 0.41
VPS53-201ENST00000291074 OR10K1Q8NGX5 313 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 ARHGAP5-AS1Q96IT6 56 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 PLEKHA6Q9Y2H5 1048 aa17.62■□□□□ 0.41
VPS53-201ENST00000291074 SCGNO76038 276 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 IGLV3-1P01715 115 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 HIST1H1DP16402 221 aaKnown RBP17.61■□□□□ 0.41
VPS53-201ENST00000291074 ZBTB25P24278 435 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 STARP49675 285 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 DCAF12Q5T6F0 453 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 SLC25A42Q86VD7 318 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 ST8SIA4Q92187 359 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 LOXL2Q9Y4K0 774 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 POM121CA8CG34 1229 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 RP2O75695 350 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 P04436 131 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 ZNF250P15622 560 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 KISS1Q15726 138 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 UBE2V2Q15819 145 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 BEST3Q8N1M1 668 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 ESX1Q8N693 406 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 DTWD2Q8NBA8 298 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 OR5M8Q8NGP6 311 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 CT55Q8WUE5 264 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 SEC22AQ96IW7 307 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 PADI1Q9ULC6 663 aa17.61■□□□□ 0.41
VPS53-201ENST00000291074 M0R135 149 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 CHRM2P08172 466 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 GSK3AP49840 483 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 PRSS12P56730 875 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 MICBQ29980 383 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms