RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ACY1Q03154 408 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 TFF2Q03403 129 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 GAMTQ14353 236 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 ZDHHC22Q8N966 263 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 AVL9Q8NBF6 648 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 SMIM10Q96HG1 83 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 DGAT2Q96PD7 388 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 NUDT22Q9BRQ3 303 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 TIMM29Q9BSF4 260 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 EMC6Q9BV81 110 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 TCEAL2Q9H3H9 227 aaPredicted RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 UNKLQ9H9P5 680 aaKnown RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 EHFQ9NZC4 300 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 PCNX3Q9H6A9 2034 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 SCDO00767 359 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 CRTAPO75718 401 aaPredicted RBP12.77□□□□□ -0.36
SDC1-201ENST00000254351 FOLR2P14207 255 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 NAAAQ02083 359 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 SSBP1Q04837 148 aaKnown RBP12.77□□□□□ -0.36
SDC1-201ENST00000254351 SPEM2Q0P670 501 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 SURF2Q15527 256 aaPredicted RBP12.77□□□□□ -0.36
SDC1-201ENST00000254351 P4HA3Q7Z4N8 544 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 SLC26A10Q8NG04 563 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 NT5CQ8TCD5 201 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 OR2M4Q96R27 311 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 G6PC3Q9BUM1 346 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 PARPBPQ9NWS1 579 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 VPS13AQ96RL7 3174 aa12.77□□□□□ -0.36
SDC1-201ENST00000254351 DBX1A6NMT0 343 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 RAD51DO75771 328 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 SLC35E2P0CK97 266 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 ZNF823P16415 610 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 HTR5AP47898 357 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 RSU1Q15404 277 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 EIF5AL1Q6IS14 154 aaKnown RBP12.77□□□□□ -0.37
SDC1-201ENST00000254351 GLIPR1L1Q6UWM5 242 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 UBAC2Q8NBM4 344 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 FAM213BQ8TBF2 198 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 TM4SF19Q96DZ7 209 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 C14orf144Q96I85 54 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 ARHGAP5-AS1Q96IT6 56 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 DOK5Q9P104 306 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 PRSS37A4D1T9 235 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 FAM157AC9JC47 383 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 FGF19O95750 216 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 GIMD1P0DJR0 217 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 FABP4P15090 132 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 PPP1CCP36873 323 aaKnown RBP12.77□□□□□ -0.37
SDC1-201ENST00000254351 SCAND1P57086 179 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 CSNK2A1P68400 391 aaPredicted RBP12.77□□□□□ -0.37
SDC1-201ENST00000254351 PLAC9Q5JTB6 97 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 TSPO2Q5TGU0 170 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 FAM180AQ6UWF9 173 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 CATSPERDQ86XM0 798 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 CSNK2A3Q8NEV1 391 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 OR5H2Q8NGV7 314 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 OR14K1Q8NGZ2 314 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 FAM71F1Q96KD3 344 aaPredicted RBP12.77□□□□□ -0.37
SDC1-201ENST00000254351 HDAC8Q9BY41 377 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 SLC17A5Q9NRA2 495 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 MED29Q9NX70 200 aa12.77□□□□□ -0.37
SDC1-201ENST00000254351 TDRD6O60522 2096 aaKnown RBP12.77□□□□□ -0.37
SDC1-201ENST00000254351 ZNF878C9JN71 531 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 SYT7O43581 403 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 SFT2D2O95562 160 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 OR3A4PP47883 348 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 RGS19P49795 217 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 CASP6P55212 293 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 FIP1L1Q6UN15 594 aaKnown RBP12.76□□□□□ -0.37
SDC1-201ENST00000254351 HOGA1Q86XE5 327 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 MR1Q95460 341 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 SLC26A1Q9H2B4 701 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 RAB22AQ9UL26 194 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 IFNA17P01571 189 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 HLA-GP17693 338 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 OMGP23515 440 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 SULT1A2P50226 295 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 RAB5CP51148 216 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 P2RY4P51582 365 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 FOXL2P58012 376 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 C1orf61Q13536 156 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 ZNF141Q15928 474 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 HAGHQ16775 308 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 C21orf62-AS1Q17RA5 79 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 TMEM182Q6ZP80 229 aaPredicted RBP12.76□□□□□ -0.37
SDC1-201ENST00000254351 TOMM40LQ969M1 308 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 SAT2Q96F10 170 aaPredicted RBP12.76□□□□□ -0.37
SDC1-201ENST00000254351 GAR1Q9NY12 217 aaKnown RBP12.76□□□□□ -0.37
SDC1-201ENST00000254351 ZDHHC8Q9ULC8 765 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 DMRT1Q9Y5R6 373 aa12.76□□□□□ -0.37
SDC1-201ENST00000254351 PHF3Q92576 2039 aaKnown RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 CDRT15L2A8MXV6 281 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 ZNF264O43296 627 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 KAT7O95251 611 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 SLC34A2O95436 690 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 H2BFMP0C1H6 154 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 ZNF93P35789 620 aaPredicted RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 RAP1AP62834 184 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 OR51E1Q8TCB6 317 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 C2orf50Q96LR7 162 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms