RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 INPP5JQ15735 1006 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 PAPPA-AS1Q5QFB9 102 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 IER5LQ5T953 404 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 STUMQ69YW2 141 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SFRP4Q6FHJ7 346 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 APOOLQ6UXV4 268 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 NANOGP1Q8N7R0 232 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CANT1Q8WVQ1 401 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ASB10Q8WXI3 467 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 IL22RA2Q969J5 263 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PTDSS2Q9BVG9 487 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PARD6GQ9BYG4 376 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 SLC17A9Q9BYT1 436 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 C11orf54Q9H0W9 315 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 SLC25A32Q9H2D1 315 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LINC00587B1AMM8 73 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GAPDHSO14556 408 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 AQP8O94778 261 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RAF1P04049 648 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OR4A8P0C604 315 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CELP19835 753 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ACVR1BP36896 505 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CDX1P47902 265 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 GABRA4P48169 554 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CCR9P51686 369 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PGGT1BP53609 377 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CLDN6P56747 220 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CLN3Q13286 438 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 HLXQ14774 488 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 ACOT6Q3I5F7 207 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 MAJINQ3KP22 176 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 EEF1DP3Q658K8 133 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MEX3BQ6ZN04 569 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 OR52I1Q8NGK6 324 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OR6N2Q8NGY6 317 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OR52I2Q8NH67 350 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GPX8Q8TED1 209 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ASB17Q8WXJ9 295 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ST6GALNAC5Q9BVH7 336 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SEC11CQ9BY50 192 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ARRDC1-AS1Q9H2J1 176 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MAGIXQ9H6Y5 334 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 VPS29Q9UBQ0 182 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TRAPPC4Q9Y296 219 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RREB1Q92766 1687 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 A0A1B0GVG6 124 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RFPL4AA6NLU0 287 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RFPL4AL1F8VTS6 287 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GPR37O15354 613 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SLC16A7O60669 478 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 EEDO75530 441 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 UTS2O95399 124 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SORDQ00796 357 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CDKN3Q16667 212 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 WDR88Q6ZMY6 472 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MAP4K3Q8IVH8 894 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LNX1Q8TBB1 728 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 SFRP2Q96HF1 295 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PRELID3AQ96N28 172 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TOX2Q96NM4 488 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SLC25A51Q9H1U9 297 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PRDM7Q9NQW5 492 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SIRT3Q9NTG7 399 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 KCNK6Q9Y257 313 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MRPS28Q9Y2Q9 187 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 PTPRFP10586 1907 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 POM121BA6NF01 834 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ALX3O95076 343 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CD1EP15812 388 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 POU3F4P49335 361 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ADARB1P78563 741 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 ZXDAP98168 799 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CD226Q15762 336 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LPAL2Q16609 132 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CPNE8Q86YQ8 564 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LRRC18Q8N456 261 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CADM4Q8NFZ8 388 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LIPHQ8WWY8 451 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ERGIC1Q969X5 290 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RELTQ969Z4 430 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SEC22AQ96IW7 307 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ZIC5Q96T25 663 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GPR21Q99679 349 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 C1QTNF4Q9BXJ3 329 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 XYLT2Q9H1B5 865 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SLC6A20Q9NP91 592 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 IL37Q9NZH6 218 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CNTNAP5Q8WYK1 1306 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 DUOX1Q9NRD9 1551 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 C10orf71Q711Q0 1435 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 hCG_1818297A0A087WSY0 165 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 A0A1W2PPM1 405 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ASPDHA6ND91 283 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ZFP92A6NM28 416 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SNURFLB1AK76 121 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SH2D1BO14796 132 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CREG1O75629 220 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ABHD16AO95870 558 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PPP1R17O96001 155 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LALBAP00709 142 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms