RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 WNT5AP41221 380 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 HTR5AP47898 357 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 RGS6P49758 472 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 HCCSP53701 268 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 PSMA6P60900 246 aaKnown RBP8.46□□□□□ -1.06
CLN3-261ENST00000637686 CDK5R1Q15078 307 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 ARMCX4Q5H9R4 360 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 DMKNQ6E0U4 476 aaPredicted RBP8.46□□□□□ -1.06
CLN3-261ENST00000637686 CFAP77Q6ZQR2 320 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 ANKRD13BQ86YJ7 626 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 LINC00346Q8IVM7 164 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 ZCCHC24Q8N2G6 241 aaKnown RBP8.46□□□□□ -1.06
CLN3-261ENST00000637686 MS4A15Q8N5U1 240 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 RFLNBQ8N5W9 214 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 CCDC54Q8NEL0 328 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 OR10S1Q8NGN2 331 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 OR1J1Q8NGS3 322 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 OR1F12Q8NHA8 337 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 GATAD2BQ8WXI9 593 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 SLC7A6Q92536 515 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 THRSPQ92748 146 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 SMIM19Q96E16 107 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 YIPF6Q96EC8 236 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 C4orf45Q96LM5 186 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 AMELYQ99218 206 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 ATF6BQ99941 703 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 VRK1Q99986 396 aaPredicted RBP8.46□□□□□ -1.06
CLN3-261ENST00000637686 TMUB1Q9BVT8 246 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 BCL2L14Q9BZR8 327 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 ISG20L2Q9H9L3 353 aaKnown RBP8.46□□□□□ -1.06
CLN3-261ENST00000637686 ELOVL3Q9HB03 270 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 BARX1Q9HBU1 254 aaPredicted RBP8.46□□□□□ -1.06
CLN3-261ENST00000637686 SLCO1C1Q9NYB5 712 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 MYEF2Q9P2K5 600 aaKnown RBP8.46□□□□□ -1.06
CLN3-261ENST00000637686 DUSP13Q9UII6 198 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 GNG8Q9UK08 70 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 IKZF2Q9UKS7 526 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 LRP12Q9Y561 859 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 R4GMQ9 66 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 ARFGEF3Q5TH69 2177 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 A6NHS1 94 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 TRIM64BA6NI03 449 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 TMEM212A6NML5 194 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 SSX4O60224 188 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 ICMTO60725 284 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 SRSF10O75494 262 aaKnown RBP8.45□□□□□ -1.06
CLN3-261ENST00000637686 LY6HO94772 140 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 NGFP01138 241 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 DBHP09172 617 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 GABRA5P31644 462 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 TGFBR2P37173 567 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 RPS27P42677 84 aaKnown RBP8.45□□□□□ -1.06
CLN3-261ENST00000637686 ALDH3B1P43353 468 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 EVX1P49640 407 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 PPOXP50336 477 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 EFNA4P52798 201 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 TMBIM6P55061 237 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 ALKBH1Q13686 389 aaKnown RBP8.45□□□□□ -1.06
CLN3-261ENST00000637686 CLEC12BQ2HXU8 276 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 TP53I3Q53FA7 332 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 SPATA46Q5T0L3 261 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 CD200R1LQ6Q8B3 271 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 DRAM2Q6UX65 266 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 LRRN1Q6UXK5 716 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 KLBQ86Z14 1044 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.45□□□□□ -1.06
CLN3-261ENST00000637686 PHC2Q8IXK0 858 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 ZNF101Q8IZC7 436 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 YIPF7Q8N8F6 280 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 OR2G2Q8NGZ5 317 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 ABHD4Q8TB40 342 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 SYNPRQ8TBG9 265 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 RAB2BQ8WUD1 216 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 PHYHIPQ92561 330 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 SPTSSAQ969W0 71 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 RNF166Q96A37 237 aaPredicted RBP8.45□□□□□ -1.06
CLN3-261ENST00000637686 SORCS2Q96PQ0 1159 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 RBM38Q9H0Z9 239 aaKnown RBP8.45□□□□□ -1.06
CLN3-261ENST00000637686 DYNLRB1Q9NP97 96 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 ACOXLQ9NUZ1 547 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 ZNF391Q9UJN7 358 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 GRIP1Q9Y3R0 1128 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 ZNF469Q96JG9 3925 aaPredicted RBP8.45□□□□□ -1.06
CLN3-261ENST00000637686 ITPR3Q14573 2671 aa8.45□□□□□ -1.06
CLN3-261ENST00000637686 MAP1AP78559 2803 aaPredicted RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 A0A1W2PPW3 197 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 DPPA5A6NC42 116 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 H7C1Q1 480 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 GABARAPO95166 117 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 LALBAP00709 142 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 F12P00748 615 aaPredicted RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 SERPINA3P01011 423 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 HLA-DPB1P04440 258 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 ISG15P05161 165 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 ZNF250P15622 560 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 CD36P16671 472 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 HSD11B1P28845 292 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 LIPAP38571 399 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 MPV17P39210 176 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 TPTEP56180 551 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms