RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF555Q8NEP9 628 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 CSNK2A3Q8NEV1 391 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 RHOXF1Q8NHV9 184 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 SPRYD4Q8WW59 207 aaPredicted RBP15.51■□□□□ 0.07
CLN3-259ENST00000637551 TIMD4Q96H15 378 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 MSL2Q9HCI7 577 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 TMEM100Q9NV29 134 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 hCG_38984A0A1B0GV85 526 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 KIAA1324LA8MWY0 1029 aaPredicted RBP15.5■□□□□ 0.07
CLN3-259ENST00000637551 CLDN25C9JDP6 229 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 M0R129 80 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 SPRY3O43610 288 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 CD200P41217 278 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 GPR6P46095 362 aaPredicted RBP15.5■□□□□ 0.07
CLN3-259ENST00000637551 GZMKP49863 264 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 TIGD6Q17RP2 521 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 TMEM249Q2WGJ8 235 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 ALKBH6Q3KRA9 238 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 OGFRL1Q5TC84 451 aaPredicted RBP15.5■□□□□ 0.07
CLN3-259ENST00000637551 LPCAT4Q643R3 524 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 CLEC9AQ6UXN8 241 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 KCTD20Q7Z5Y7 419 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 NAA40Q86UY6 237 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 MRPL48Q96GC5 212 aaKnown RBP15.5■□□□□ 0.07
CLN3-259ENST00000637551 C1orf159Q96HA4 380 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 SMR3AQ99954 134 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 ZNF275Q9NSD4 429 aaPredicted RBP15.5■□□□□ 0.07
CLN3-259ENST00000637551 NUFIP1Q9UHK0 495 aaKnown RBP15.5■□□□□ 0.07
CLN3-259ENST00000637551 KLHDC2Q9Y2U9 406 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 HSPE1-MOB4S4R3N1 261 aa15.5■□□□□ 0.07
CLN3-259ENST00000637551 STAB1Q9NY15 2570 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 DYSFO75923 2080 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 DHRS7CA6NNS2 312 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 H0YJX3 145 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 TPD52L2O43399 206 aaKnown RBP15.49■□□□□ 0.07
CLN3-259ENST00000637551 CD5LO43866 347 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 CXCR4P61073 352 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 ELF3P78545 371 aaPredicted RBP15.49■□□□□ 0.07
CLN3-259ENST00000637551 ZBTB37Q5TC79 503 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 LRRN1Q6UXK5 716 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 SETD9Q8NE22 299 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 OR2Z1Q8NG97 314 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 OR51G2Q8NGK0 314 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 HAVCR2Q8TDQ0 301 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 YIPF5Q969M3 257 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 REEP6Q96HR9 211 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 INPP5EQ9NRR6 644 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 MRPS18AQ9NVS2 196 aaKnown RBP15.49■□□□□ 0.07
CLN3-259ENST00000637551 FAM206AQ9NX38 181 aa15.49■□□□□ 0.07
CLN3-259ENST00000637551 TMEM269A0A1B0GVZ9 245 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 GGT3PA6NGU5 568 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 H0YAE9 185 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 DLGAP1O14490 977 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 LILRA1O75019 489 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 MRPL3P09001 348 aaKnown RBP15.48■□□□□ 0.07
CLN3-259ENST00000637551 ATP6V1E1P36543 226 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 FAM3AP98173 230 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 TSTQ16762 297 aaKnown RBP15.48■□□□□ 0.07
CLN3-259ENST00000637551 ZIK1Q3SY52 487 aaPredicted RBP15.48■□□□□ 0.07
CLN3-259ENST00000637551 PLEKHG7Q6ZR37 379 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 FAM57BQ71RH2 274 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 BCDIN3DQ7Z5W3 292 aaKnown RBP15.48■□□□□ 0.07
CLN3-259ENST00000637551 PEG10Q86TG7 708 aaKnown RBP15.48■□□□□ 0.07
CLN3-259ENST00000637551 ENTHD1Q8IYW4 607 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 CCDC54Q8NEL0 328 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 Q8TCH9 128 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 RAB1CQ92928 201 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 SGK3Q96BR1 496 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 PGAM5Q96HS1 289 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 OR2V2Q96R30 315 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 TMEM160Q9NX00 188 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 DNAJC27Q9NZQ0 273 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 COPS3Q9UNS2 423 aa15.48■□□□□ 0.07
CLN3-259ENST00000637551 SONP18583 2426 aaKnown RBP15.47■□□□□ 0.07
CLN3-259ENST00000637551 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.47■□□□□ 0.07
CLN3-259ENST00000637551 J3QRE1 110 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 MLNRO43193 412 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 IGLV3-1P01715 115 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 KRT8P05787 483 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 RPSAP08865 295 aaKnown RBP15.47■□□□□ 0.07
CLN3-259ENST00000637551 SLC2A1P11166 492 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 COL8A2P25067 703 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 PEX2P28328 305 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 KRTAP1-1Q07627 177 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 RAB40BQ12829 278 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 CARTPTQ16568 116 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 ZNF684Q5T5D7 378 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 Q6ZSR3 168 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 SPATC1Q76KD6 591 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 C1orf87Q8N0U7 546 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 OR56B2PQ8NGI1 322 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 OR2AE1Q8NHA4 323 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 GTF3AQ92664 365 aaKnown RBP15.47■□□□□ 0.07
CLN3-259ENST00000637551 MEGF10Q96KG7 1140 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 JAM3Q9BX67 310 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 IKZF2Q9UKS7 526 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 PPP1R3CQ9UQK1 317 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 EXOGQ9Y2C4 368 aaKnown RBP15.47■□□□□ 0.07
CLN3-259ENST00000637551 MPC1Q9Y5U8 109 aa15.47■□□□□ 0.07
CLN3-259ENST00000637551 R4GMQ9 66 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms