RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PARP16Q8N5Y8 322 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 SLC30A7Q8NEW0 376 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 SLITRK2Q9H156 845 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 POFUT1Q9H488 388 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 MEMO1Q9Y316 297 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 FAHP16930 419 aa17.41■□□□□ 0.38
CLN3-250ENST00000636839 C1orf162Q8NEQ5 155 aaPredicted RBP17.41■□□□□ 0.38
CLN3-250ENST00000636839 OR13C9Q8NGT0 318 aa17.41■□□□□ 0.38
CLN3-250ENST00000636839 OR5H6Q8NGV6 325 aa17.41■□□□□ 0.38
CLN3-250ENST00000636839 S100PBPQ96BU1 408 aa17.41■□□□□ 0.38
CLN3-250ENST00000636839 PPP1R3EQ9H7J1 279 aa17.41■□□□□ 0.38
CLN3-250ENST00000636839 STARD10Q9Y365 291 aa17.41■□□□□ 0.38
CLN3-250ENST00000636839 V9GY05 133 aa17.41■□□□□ 0.38
CLN3-250ENST00000636839 IFITM5A6NNB3 132 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 MSTNO14793 375 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 APLNRP35414 380 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 HLXQ14774 488 aaPredicted RBP17.4■□□□□ 0.38
CLN3-250ENST00000636839 SERPINA12Q8IW75 414 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 DTX3Q8N9I9 347 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 CRNNQ9UBG3 495 aaPredicted RBP17.4■□□□□ 0.38
CLN3-250ENST00000636839 CGGBP1Q9UFW8 167 aaPredicted RBP17.4■□□□□ 0.38
CLN3-250ENST00000636839 ATPIF1Q9UII2 106 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 PEX16Q9Y5Y5 336 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 ARPC4-TTLL3A0A0A6YYG9 625 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 ANXA2P2A6NMY6 339 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 ZNF20P17024 532 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 S100A5P33763 92 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 DPPA2Q7Z7J5 298 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 BOD1Q96IK1 185 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 VKORC1Q9BQB6 163 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 CKLFQ9UBR5 152 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 ZNF629Q9UEG4 869 aaPredicted RBP17.4■□□□□ 0.38
CLN3-250ENST00000636839 PIGLQ9Y2B2 252 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 CMAHPQ9Y471 501 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 V9GYS6 101 aa17.4■□□□□ 0.38
CLN3-250ENST00000636839 IGSF10Q6WRI0 2623 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 OR5H1A6NKK0 313 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 PDCD5O14737 125 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 DHRS3O75911 302 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 FSTP19883 344 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 IL32P24001 234 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 CA7P43166 264 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 SNX29P2Q8IUI4 249 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 AP3S1Q92572 193 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 RND1Q92730 232 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 SPACA5Q96QH8 159 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 FOXJ3Q9UPW0 622 aa17.39■□□□□ 0.37
CLN3-250ENST00000636839 CBR1P16152 277 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 HOXC12P31275 282 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 DDOSTP39656 456 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 FAM3AP98173 230 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 CCDC36Q8IYA8 594 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 OR52N4Q8NGI2 321 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 KCNK15Q9H427 330 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 IGKV1-9A0A0C4DH69 117 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 AIPO00170 330 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 PLA2G7Q13093 441 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 RFPL4BQ6ZWI9 263 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 CCDC190Q86UF4 302 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 OR1M1Q8NGA1 313 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 TRMT10AQ8TBZ6 339 aaKnown RBP17.38■□□□□ 0.37
CLN3-250ENST00000636839 THRSPQ92748 146 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 PLEKHA1Q9HB21 404 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 SLC25A15Q9Y619 301 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 ADGRG4Q8IZF6 3080 aa17.38■□□□□ 0.37
CLN3-250ENST00000636839 CLDN25C9JDP6 229 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 CCL21O00585 134 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 IGKV3-15P01624 115 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 CCKARP32238 428 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 GSK3AP49840 483 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 GK2Q14410 553 aaPredicted RBP17.37■□□□□ 0.37
CLN3-250ENST00000636839 P2RY14Q15391 338 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 ST3GAL2Q16842 350 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 SPATA46Q5T0L3 261 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 ZNF529Q6P280 563 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 OR5AS1Q8N127 324 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 OR5D14Q8NGL3 314 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 NPRL2Q8WTW4 380 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 CCDC120Q96HB5 630 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 LIN7BQ9HAP6 207 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 PTTG3PQ9NZH4 202 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 CRIM1Q9NZV1 1036 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 hCG_38984A0A1B0GV85 526 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 FAM157BP0CG42 384 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 HOXB1P14653 301 aaPredicted RBP17.37■□□□□ 0.37
CLN3-250ENST00000636839 UBE2V2Q15819 145 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 DDI2Q5TDH0 399 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 Q6ZSR3 168 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 MRGPRGQ86SM5 289 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 SAMD12Q8N8I0 201 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 LGALS14Q8TCE9 139 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 CEP19Q96LK0 163 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 ACTR6Q9GZN1 396 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 PIGMQ9H3S5 423 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 PLGRKTQ9HBL7 147 aa17.37■□□□□ 0.37
CLN3-250ENST00000636839 EIF4EP06730 217 aaKnown RBP17.36■□□□□ 0.37
CLN3-250ENST00000636839 CECR9P0C854 216 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 ELK1P19419 428 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 PSMB1P20618 241 aaKnown RBP17.36■□□□□ 0.37
CLN3-250ENST00000636839 CASP6P55212 293 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms