RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 A6NLC8 198 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 P2RY10O00398 339 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 FABP3P05413 133 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 NPY4RP50391 375 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 KRTAP10-3P60369 221 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 TSPAN31Q12999 210 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 HSP90B2PQ58FF3 399 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 OLFML2AQ68BL7 652 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 GCSAMQ8N6F7 178 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 ZNF511Q8NB15 262 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 OR9Q2Q8NGE9 314 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 OR9Q1Q8NGQ5 310 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 OR4F5Q8NH21 305 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 MCUR1Q96AQ8 359 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 COPS4Q9BT78 406 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 SLC22A4Q9H015 551 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 CENPMQ9NSP4 180 aa13.37□□□□□ -0.27
CLN3-246ENST00000636228 A0A1B0GW55 424 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 hCG_1807616A0A1W2PRN6 198 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 ARPC2O15144 300 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 PTBP3O95758 552 aaKnown RBP13.36□□□□□ -0.27
CLN3-246ENST00000636228 SPARCP09486 303 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 DUX4L2P0CJ85 424 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 DUX4L3P0CJ86 424 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 DUX4L4P0CJ87 422 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 DUX4L5P0CJ88 424 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 DUX4L6P0CJ89 424 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 DUX4L7P0CJ90 424 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 IFNGR2P38484 337 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 BPIFB3P59826 476 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 PRB3Q04118 309 aaPredicted RBP13.36□□□□□ -0.27
CLN3-246ENST00000636228 KCNJ8Q15842 424 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 ZNF362Q5T0B9 420 aaPredicted RBP13.36□□□□□ -0.27
CLN3-246ENST00000636228 METTL11BQ5VVY1 283 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 DUX4L9Q6RFH8 374 aaPredicted RBP13.36□□□□□ -0.27
CLN3-246ENST00000636228 BTN2A1Q7KYR7 527 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 FAM90A1Q86YD7 464 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 SLC37A3Q8NCC5 494 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 OR56B2PQ8NGI1 322 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 OR8D4Q8NGM9 314 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 GATAD2BQ8WXI9 593 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 FAM71F1Q96KD3 344 aaPredicted RBP13.36□□□□□ -0.27
CLN3-246ENST00000636228 FAM107BQ9H098 131 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 SIRPDQ9H106 197 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 PPP1R3EQ9H7J1 279 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 DUX4Q9UBX2 424 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 KCNG2Q9UJ96 466 aa13.36□□□□□ -0.27
CLN3-246ENST00000636228 TRAV38-1A0A0B4J264 116 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 IGHV1-69DA0A0B4J2H0 117 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 A0A0U1RQK1 487 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 BHLHE40O14503 412 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 DVL1O14640 695 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 IGHV1-69P01742 117 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 IGHV4-59P01825 116 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 GYPBP06028 91 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 LIPFP07098 398 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 PRDX6P30041 224 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 OTX1P32242 354 aaPredicted RBP13.35□□□□□ -0.27
CLN3-246ENST00000636228 PPP1R8Q12972 351 aaKnown RBP13.35□□□□□ -0.27
CLN3-246ENST00000636228 TAF13Q15543 124 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 BRICD5Q6PL45 260 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 DRAM2Q6UX65 266 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 ZDHHC21Q8IVQ6 265 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 PNLDC1Q8NA58 520 aaKnown RBP13.35□□□□□ -0.27
CLN3-246ENST00000636228 ST8SIA4Q92187 359 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 SLAMF6Q96DU3 332 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 SEH1LQ96EE3 360 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 NSMCE2Q96MF7 247 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 CCT8L2Q96SF2 557 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 CDRT15Q96T59 188 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 BTBD10Q9BSF8 475 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 ACOXLQ9NUZ1 547 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 MRPL15Q9P015 296 aaKnown RBP13.35□□□□□ -0.27
CLN3-246ENST00000636228 KIF17Q9P2E2 1029 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 CD300AQ9UGN4 299 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 MAGEL2Q9UJ55 1249 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 NOP16Q9Y3C1 178 aaKnown RBP13.35□□□□□ -0.27
CLN3-246ENST00000636228 CDH10Q9Y6N8 788 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 COMMD3-BMI1R4GMX3 469 aa13.35□□□□□ -0.27
CLN3-246ENST00000636228 A0A1B0GUS0 222 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 CLPSL1A2RUU4 121 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 ZNF593O00488 134 aaPredicted RBP13.34□□□□□ -0.27
CLN3-246ENST00000636228 TBX1O43435 398 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 NDUFA7O95182 113 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 GASTP01350 101 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 CLUP10909 449 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 WDR86Q86TI4 376 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 C11orf53Q8IXP5 236 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 PLPP7Q8NBV4 271 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 SCCPDHQ8NBX0 429 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 OR52L1Q8NGH7 329 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 OR2T4Q8NH00 348 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 SSMEM1Q8WWF3 244 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 CCL13Q99616 98 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 KCNJ15Q99712 375 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 CITED1Q99966 193 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 TRIM15Q9C019 465 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 IL1RAPQ9NPH3 570 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 DNAJB11Q9UBS4 358 aa13.34□□□□□ -0.27
CLN3-246ENST00000636228 TNFRSF11BO00300 401 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms