RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TRIM77I1YAP6 450 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 SCRG1O75711 98 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 IFNA6P05013 189 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 HIST1H1DP16402 221 aaKnown RBP11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ABOP16442 354 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 CDAP32320 146 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 LUMP51884 338 aaPredicted RBP11.29□□□□□ -0.6
LINC00540-203ENST00000631321 BTN1A1Q13410 526 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ACTBL2Q562R1 376 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 RTN4RL2Q86UN3 420 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 NAA40Q86UY6 237 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ZBTB44Q8NCP5 570 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 OR10K1Q8NGX5 313 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 OR4K15Q8NH41 348 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 SLC22A8Q8TCC7 542 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 SLC25A43Q8WUT9 341 aaPredicted RBP11.29□□□□□ -0.6
LINC00540-203ENST00000631321 SPSB2Q99619 263 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 SEC61A2Q9H9S3 476 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF319Q9P2F9 582 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 LOC100509620A0A075B734 347 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 TRBV6-7A0A0A0MS04 114 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 CDC14BO60729 498 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 OR2J2O76002 312 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 CYC1P08574 325 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 CTSSP25774 331 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 FKBP2P26885 142 aaKnown RBP11.28□□□□□ -0.6
LINC00540-203ENST00000631321 ADH6P28332 368 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 PRKXP51817 358 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 FAM189A2Q15884 450 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 PNLIPRP3Q17RR3 467 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 PLAC9Q5JTB6 97 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 FAM69BQ5VUD6 431 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 DOK3Q7L591 496 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 ABHD12BQ7Z5M8 362 aaPredicted RBP11.28□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF101Q8IZC7 436 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 TMEM104Q8NE00 496 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 TERB2Q8NHR7 220 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 SOX7Q9BT81 388 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 GPR84Q9NQS5 396 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 ASH2LQ9UBL3 628 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 HDGFL3Q9Y3E1 203 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 A0A1W2PNR3 127 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 AQP7P3A6NL99 342 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 TEX46H3BTG2 121 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 SMAD9O15198 467 aaKnown RBP11.28□□□□□ -0.6
LINC00540-203ENST00000631321 PMP2P02689 132 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 AVPR2P30518 371 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF273Q14593 569 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 LRRC37A5PQ49AS3 106 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 ARRDC1Q8N5I2 433 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 OR2I1PQ8NGU4 316 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 THAP6Q8TBB0 222 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 RAB3CQ96E17 227 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 OR5B2Q96R09 309 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 OCSTAMPQ9BR26 566 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 SLC26A1Q9H2B4 701 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 GAREM1Q9H706 876 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 RARRES3Q9UL19 164 aa11.28□□□□□ -0.6
LINC00540-203ENST00000631321 ARID1BQ8NFD5 2236 aaPredicted RBP11.27□□□□□ -0.6
LINC00540-203ENST00000631321 CDK2AP1O14519 115 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 RER1O15258 196 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 MPIG6BO95866 241 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 CRHP06850 196 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 IGFBP4P22692 258 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 EIF1P41567 113 aaKnown RBP11.27□□□□□ -0.6
LINC00540-203ENST00000631321 OR3A4PP47883 348 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 CX3CR1P49238 355 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 STARP49675 285 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 TMEM50BP56557 158 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 GRB2P62993 217 aaKnown RBP11.27□□□□□ -0.6
LINC00540-203ENST00000631321 INPP5JQ15735 1006 aaPredicted RBP11.27□□□□□ -0.6
LINC00540-203ENST00000631321 MICBQ29980 383 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 FAM74A1Q5RGS3 127 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 TDHQ8IZJ6 230 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 TMEM185AQ8NFB2 350 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 SPACA9Q96E40 222 aaPredicted RBP11.27□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF75AQ96N20 296 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 SPACA5Q96QH8 159 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 CRB3Q9BUF7 120 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 NMES1Q9C002 83 aa11.27□□□□□ -0.6
LINC00540-203ENST00000631321 MS4A7Q9GZW8 240 aaPredicted RBP11.27□□□□□ -0.6
LINC00540-203ENST00000631321 C19orf25Q9UFG5 118 aaPredicted RBP11.27□□□□□ -0.6
LINC00540-203ENST00000631321 A0A0B4J2A0 478 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 LY6G6EA0A0G2JKS1 128 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 MFNGO00587 321 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 SOCS1O15524 211 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 IGLV3-1P01715 115 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 OPN1LWP04000 364 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 QDPRP09417 244 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 ZNF43P17038 809 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 AKR1C4P17516 323 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 CNR1P21554 472 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 ANOS1P23352 680 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 VAMP1P23763 118 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 PAN3Q58A45 887 aaKnown RBP11.27□□□□□ -0.61
LINC00540-203ENST00000631321 FAM89BQ8N5H3 189 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 WDSUB1Q8N9V3 476 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 OR56B1Q8NGI3 324 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 OR14K1Q8NGZ2 314 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 MARCH1Q8TCQ1 289 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms