RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZNF322Q6U7Q0 402 aaPredicted RBP17.55■□□□□ 0.4
CLN3-240ENST00000631023 GALNT4Q8N4A0 578 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 ZNF555Q8NEP9 628 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 OR2T27Q8NH04 317 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 RAB1CQ92928 201 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 OR2V2Q96R30 315 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 C2CD3Q4AC94 2353 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 NIPBLQ6KC79 2804 aaeCLIP17.54■□□□□ 0.4
CLN3-240ENST00000631023 A0A1B0GWJ7 208 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 ANOS1P23352 680 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 GZMKP49863 264 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 EGR3Q06889 387 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 LRRC36Q1X8D7 754 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 CYB5R2Q6BCY4 276 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 PEG10Q86TG7 708 aaKnown RBP17.54■□□□□ 0.4
CLN3-240ENST00000631023 PACRGLQ8N7B6 248 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 OR10AD1Q8NGE0 317 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 ITLN1Q8WWA0 313 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 HPS1Q92902 700 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 Q96MT0 163 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 MRPL15Q9P015 296 aaKnown RBP17.54■□□□□ 0.4
CLN3-240ENST00000631023 ZNF391Q9UJN7 358 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 PPP1R3CQ9UQK1 317 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 CACNG2Q9Y698 323 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 DOCK11Q5JSL3 2073 aa17.54■□□□□ 0.4
CLN3-240ENST00000631023 TMEM269A0A1B0GVZ9 245 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 SLC16A6O15403 523 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 CD5LO43866 347 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 ENTPD6O75354 484 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 MTNR1AP48039 350 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 FAM3AP98173 230 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 GFOD2Q3B7J2 385 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 ZNF829Q3KNS6 432 aaPredicted RBP17.53■□□□□ 0.4
CLN3-240ENST00000631023 SPRNQ5BIV9 151 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 OR56B2PQ8NGI1 322 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 DCLRE1BQ9H816 532 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 TREM2Q9NZC2 230 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 LRP5LA4QPB2 252 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 H0YL77 283 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 IFNL4K9M1U5 179 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 MLNRO43193 412 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 GMDSO60547 372 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 HLA-DPB1P04440 258 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 CA6P23280 308 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 KRTAP1-1Q07627 177 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 OR8G1Q15617 311 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 SNCBQ16143 134 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 LPCAT4Q643R3 524 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 KLBQ86Z14 1044 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 FTMTQ8N4E7 242 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 OR10H4Q8NGA5 316 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 MEGF10Q96KG7 1140 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 APOL4Q9BPW4 351 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 TTTY10Q9BZA0 68 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 ZNF319Q9P2F9 582 aa17.53■□□□□ 0.4
CLN3-240ENST00000631023 ABCA2Q9BZC7 2435 aa17.52■□□□□ 0.4
CLN3-240ENST00000631023 ANKRD30BLA7E2S9 258 aa17.52■□□□□ 0.39
CLN3-240ENST00000631023 F5H5P2 479 aa17.52■□□□□ 0.39
CLN3-240ENST00000631023 CELF2-AS1Q8N7Q2 184 aa17.52■□□□□ 0.39
CLN3-240ENST00000631023 OR8B12Q8NGG6 310 aa17.52■□□□□ 0.39
CLN3-240ENST00000631023 TBX5Q99593 518 aa17.52■□□□□ 0.39
CLN3-240ENST00000631023 TMEM106BQ9NUM4 274 aa17.52■□□□□ 0.39
CLN3-240ENST00000631023 WNK2Q9Y3S1 2297 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 PRR32B1ATL7 298 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 KRT8P05787 483 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 IGHV4-31P0DP07 118 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 PEX2P28328 305 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 GSK3AP49840 483 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 MMP16P51512 607 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 ELF3P78545 371 aaPredicted RBP17.51■□□□□ 0.39
CLN3-240ENST00000631023 MVKQ03426 396 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 MZT1Q08AG7 82 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 ENTHD1Q8IYW4 607 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 RFLNBQ8N5W9 214 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 SPERTQ8NA61 448 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 CSNK2A3Q8NEV1 391 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 RHOXF1Q8NHV9 184 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 ITFG2Q969R8 447 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 RNFT2Q96EX2 444 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 GCM1Q9NP62 436 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 FAM206AQ9NX38 181 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 WIPI2Q9Y4P8 454 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 PCDHGB1Q9Y5G3 927 aa17.51■□□□□ 0.39
CLN3-240ENST00000631023 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.5■□□□□ 0.39
CLN3-240ENST00000631023 hCG_38984A0A1B0GV85 526 aa17.5■□□□□ 0.39
CLN3-240ENST00000631023 A0A1W2PQL4 384 aaPredicted RBP17.5■□□□□ 0.39
CLN3-240ENST00000631023 APOL3O95236 402 aa17.5■□□□□ 0.39
CLN3-240ENST00000631023 AVPI1Q5T686 147 aa17.5■□□□□ 0.39
CLN3-240ENST00000631023 ADAT1Q9BUB4 502 aaKnown RBP17.5■□□□□ 0.39
CLN3-240ENST00000631023 NARFLQ9H6Q4 476 aa17.5■□□□□ 0.39
CLN3-240ENST00000631023 YAE1D1Q9NRH1 226 aa17.5■□□□□ 0.39
CLN3-240ENST00000631023 A0A0U1RQV5 110 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 GABRB1P18505 474 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 ACTC1P68032 377 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 ACTA1P68133 377 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 TTC23Q5W5X9 447 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 YIPF7Q8N8F6 280 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 CLDND2Q8NHS1 167 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 ERGIC1Q969X5 290 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 PBOV1Q9GZY1 135 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms