RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 HDGFL3Q9Y3E1 203 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 KIAA1217Q5T5P2 1943 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 EP300Q09472 2414 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-212ENST00000616140 A0A087WZY1 265 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 C5orf49A4QMS7 147 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 HSBP1L1C9JCN9 74 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM127O75204 238 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 C21orf58P58505 322 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM41BQ5BJD5 291 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 RPH3ALQ9UNE2 315 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 ST3GAL6Q9Y274 331 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 GLSO94925 669 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-212ENST00000616140 SCAF4O95104 1147 aaKnown RBP12.62□□□□□ -0.39
CPSF1-212ENST00000616140 GPANK1O95872 356 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 PSMB3P49720 205 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 P2RX3P56373 397 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 HAGHQ16775 308 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 SPANXN5Q5MJ07 72 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 LCN15Q6UWW0 184 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF707Q96C28 371 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-212ENST00000616140 AK3Q9UIJ7 227 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 USP54Q70EL1 1684 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 IMPA2O14732 288 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 NDUFB6O95139 128 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 SLC25A1P53007 311 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 PIGPP57054 158 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF117Q03924 483 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 ST3GAL2Q16842 350 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 PRICKLE4Q2TBC4 344 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 SFTPA1Q8IWL2 248 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 COX14Q96I36 57 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 MARVELD1Q9BSK0 173 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 GAB2Q9UQC2 676 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 ACKR3P25106 362 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 CDKN2AP42771 156 aaKnown RBP12.61□□□□□ -0.39
CPSF1-212ENST00000616140 TOMM34Q15785 309 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-212ENST00000616140 OR2B11Q5JQS5 317 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM71Q6P5X7 295 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF808Q8N4W9 903 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-212ENST00000616140 OR4D11Q8NGI4 311 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 SPACA9Q96E40 222 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-212ENST00000616140 C2orf50Q96LR7 162 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 MAGT1Q9H0U3 335 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 ZFC3H1O60293 1989 aaKnown RBP12.61□□□□□ -0.39
CPSF1-212ENST00000616140 MDFIC2A0A1B0GVS7 189 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 TRIM77I1YAP6 450 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 IL5P05113 134 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 CT62P0C5K7 136 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 CD37P11049 281 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 C6orf15Q6UXA7 325 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-212ENST00000616140 KMT5CQ86Y97 462 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM123Q8N131 208 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 REEP6Q96HR9 211 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 NIT2Q9NQR4 276 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 OR5V1Q9UGF6 321 aa12.61□□□□□ -0.39
CPSF1-212ENST00000616140 IGHV5-51A0A0C4DH38 117 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 UMAD1C9J7I0 102 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 ENSAO43768 121 aaKnown RBP12.6□□□□□ -0.39
CPSF1-212ENST00000616140 SCGB1D1O95968 90 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 HLA-HP01893 362 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 LSM11P83369 360 aaKnown RBP eCLIP12.6□□□□□ -0.395e-7■■□□□ 14.1
CPSF1-212ENST00000616140 ZNF85Q03923 595 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 SSBP1Q04837 148 aaKnown RBP12.6□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM128Q5BJH2 165 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 ETFBKMTQ8IXQ9 262 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 ARHGEF39Q8N4T4 335 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 AKR7LQ8NHP1 331 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 NANPQ8TBE9 248 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 MTFP1Q9UDX5 166 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 CCDC88CQ9P219 2028 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 E5RGE8 158 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 DCTN6O00399 190 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 CLDN15P56746 228 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 PPP1CAP62136 330 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 FZD2Q14332 565 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF425Q6IV72 752 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 ARRDC1Q8N5I2 433 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 RTL8AQ9BWD3 113 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 DEFB127Q9H1M4 99 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 PLEKHA2Q9HB19 425 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 FAM60AQ9NP50 221 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 NSG2Q9Y328 171 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 C2CD4DB7Z1M9 353 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 OR2B8PP59922 312 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 MYBPHQ13203 477 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 OR8B8Q15620 311 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 H2BFWTQ7Z2G1 175 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 SPEM1Q8N4L4 309 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 PLA2G2FQ9BZM2 168 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 VN1R1Q9GZP7 353 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 GNG13Q9P2W3 67 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 POLDIP2Q9Y2S7 368 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 SSSCA1O60232 199 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 NTN1O95631 604 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 HLA-DOBP13765 273 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 HAAOP46952 286 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 SUMO3P55854 103 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-212ENST00000616140 TDHQ8IZJ6 230 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 MAP6Q96JE9 813 aa12.6□□□□□ -0.39
CPSF1-212ENST00000616140 PPP1R3CQ9UQK1 317 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms