RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 C1orf198Q9H425 327 aa9.91□□□□□ -0.82
LINC00539-204ENST00000608957 SLCO1C1Q9NYB5 712 aa9.91□□□□□ -0.82
LINC00539-204ENST00000608957 MYEF2Q9P2K5 600 aaKnown RBP9.91□□□□□ -0.82
LINC00539-204ENST00000608957 STUB1Q9UNE7 303 aa9.91□□□□□ -0.82
LINC00539-204ENST00000608957 GRIP1Q9Y3R0 1128 aa9.91□□□□□ -0.82
LINC00539-204ENST00000608957 LHFPL6Q9Y693 200 aa9.91□□□□□ -0.82
LINC00539-204ENST00000608957 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.91□□□□□ -0.82
LINC00539-204ENST00000608957 VWC2LB2RUY7 222 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 E9PI62 339 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 SLC22A1O15245 554 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 MMP7P09237 267 aaPredicted RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 NPR2P20594 1047 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 PSMA1P25786 263 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 PSMB10P40306 273 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 TGM4P49221 684 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 PPOXP50336 477 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 RIDAP52758 137 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 SNRPD2P62316 118 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 RPS25P62851 125 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 AQP6Q13520 282 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 GPR50Q13585 617 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 ENDOGQ14249 297 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 CDK5R1Q15078 307 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 CCDC58Q4VC31 144 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 LIPNQ5VXI9 398 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 RPL22L1Q6P5R6 122 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 CORO6Q6QEF8 472 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 ARL9Q6T311 187 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 LRRN1Q6UXK5 716 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 CFAP77Q6ZQR2 320 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 KRT77Q7Z794 578 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 LRP11Q86VZ4 500 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 OR2AJ1Q8NGZ0 328 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 FAM168AQ92567 244 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 RPL3LQ92901 407 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 SMIM19Q96E16 107 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 VRK1Q99986 396 aaPredicted RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 MROQ9BYG7 248 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 MRPL37Q9BZE1 423 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 OR51E2Q9H255 320 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 ELOVL3Q9HB03 270 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 ASH2LQ9UBL3 628 aa9.9□□□□□ -0.82
LINC00539-204ENST00000608957 SF3B6Q9Y3B4 125 aaKnown RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 SIRT4Q9Y6E7 314 aaPredicted RBP9.9□□□□□ -0.82
LINC00539-204ENST00000608957 LOC100506127A0A0U1RQW1 187 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 OGG1O15527 345 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 PLPP2O43688 288 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 CD5LO43866 347 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 ZNF254O75437 659 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 RPP14O95059 124 aaKnown RBP9.89□□□□□ -0.83
LINC00539-204ENST00000608957 CCL2P13500 99 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 GDI2P50395 445 aaKnown RBP9.89□□□□□ -0.83
LINC00539-204ENST00000608957 DSCR9P59020 149 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 NCS1P62166 190 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 LSM3P62310 102 aaKnown RBP9.89□□□□□ -0.83
LINC00539-204ENST00000608957 LOXL1Q08397 574 aaPredicted RBP9.89□□□□□ -0.83
LINC00539-204ENST00000608957 NRN1LQ496H8 165 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 FAM27BQ5VT28 67 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 DMKNQ6E0U4 476 aaPredicted RBP9.89□□□□□ -0.83
LINC00539-204ENST00000608957 DEGS2Q6QHC5 323 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 SPATC1Q76KD6 591 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 LRRC18Q8N456 261 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 IL17RDQ8NFM7 739 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 RPS4Y2Q8TD47 263 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 RNF133Q8WVZ7 376 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 MRPL24Q96A35 216 aaKnown RBP9.89□□□□□ -0.83
LINC00539-204ENST00000608957 SLAMF6Q96DU3 332 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 MAP6Q96JE9 813 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 CHCHD6Q9BRQ6 235 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 TMED9Q9BVK6 235 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 ZNF416Q9BWM5 594 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 SIAEQ9HAT2 523 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 PTTG2Q9NZH5 202 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 FZR1Q9UM11 496 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 LRP12Q9Y561 859 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 CUBNO60494 3623 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 JMJD1CQ15652 2540 aa9.89□□□□□ -0.83
LINC00539-204ENST00000608957 KIAA1324LA8MWY0 1029 aaPredicted RBP9.88□□□□□ -0.83
LINC00539-204ENST00000608957 ZNF878C9JN71 531 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 GPX5O75715 221 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 SERPINA5P05154 406 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 CD1AP06126 327 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 CST2P09228 141 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 H2BFMP0C1H6 154 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 BMP4P12644 408 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 SLC25A16P16260 332 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 GLRXP35754 106 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 OPRL1P41146 370 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 CRYBB2P43320 205 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 PDLIM4P50479 330 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 NANOS3P60323 173 aaKnown RBP9.88□□□□□ -0.83
LINC00539-204ENST00000608957 ERVS71-1P61550 626 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 VBP1P61758 197 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 SLC3A1Q07837 685 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 ALKBH1Q13686 389 aaKnown RBP9.88□□□□□ -0.83
LINC00539-204ENST00000608957 TRAM1Q15629 374 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 TMEM249Q2WGJ8 235 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 GDPGP1Q6ZNW5 385 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 SLC16A14Q7RTX9 510 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 OR10S1Q8NGN2 331 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms