RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CELF2-AS1Q8N7Q2 184 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 CSNK2A3Q8NEV1 391 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 OR10AD1Q8NGE0 317 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 OR11L1Q8NGX0 322 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 CLDND2Q8NHS1 167 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 ITFG2Q969R8 447 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 MEGF10Q96KG7 1140 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 HRASLS5Q96KN8 279 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 MYCBPQ99417 103 aaPredicted RBP16.4■□□□□ 0.22
UPF1-212ENST00000601689 GAL3ST1Q99999 423 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 LPAR3Q9UBY5 353 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 PCDHB10Q9UN67 800 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 WIPI2Q9Y4P8 454 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 NPTNQ9Y639 398 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 C2CD3Q4AC94 2353 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 TLN2Q9Y4G6 2542 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 MPZL2O60487 215 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 HTR1FP30939 366 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 DCTDP32321 178 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 GNALP38405 381 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 PSMA6P60900 246 aaKnown RBP16.39■□□□□ 0.21
UPF1-212ENST00000601689 ZIK1Q3SY52 487 aaPredicted RBP16.39■□□□□ 0.21
UPF1-212ENST00000601689 AVPI1Q5T686 147 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 SLC35F2Q8IXU6 374 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 SPICQ8N5J4 248 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 OR51G2Q8NGK0 314 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 SPSB4Q96A44 273 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 MSI2Q96DH6 328 aaKnown RBP16.39■□□□□ 0.21
UPF1-212ENST00000601689 AMELYQ99218 206 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 ADAT1Q9BUB4 502 aaKnown RBP16.39■□□□□ 0.21
UPF1-212ENST00000601689 C8orf4Q9NR00 106 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 C14orf119Q9NWQ9 140 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 CLN6Q9NWW5 311 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 TMEM160Q9NX00 188 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 CDC42EP3Q9UKI2 254 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 LRP12Q9Y561 859 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 GMPPBQ9Y5P6 360 aa16.39■□□□□ 0.21
UPF1-212ENST00000601689 TMEM269A0A1B0GVZ9 245 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 M0R129 80 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 CA6P23280 308 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 CXCR4P61073 352 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 GABPB1Q06547 395 aaPredicted RBP16.38■□□□□ 0.21
UPF1-212ENST00000601689 EGR3Q06889 387 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 KRTAP1-1Q07627 177 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 CHRFAM7AQ494W8 412 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 KLHL36Q8N4N3 616 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 ZNF555Q8NEP9 628 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 OR56B2PQ8NGI1 322 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 OR8S1Q8NH09 359 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 SGK3Q96BR1 496 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 Q96MT0 163 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 OR8B4Q96RC9 309 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 SHARPINQ9H0F6 387 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 ABCB9Q9NP78 766 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 CACNG2Q9Y698 323 aa16.38■□□□□ 0.21
UPF1-212ENST00000601689 ANXA2P2A6NMY6 339 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 F5H5P2 479 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 HLA-DPB1P04440 258 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 KRT8P05787 483 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 SBK2P0C263 348 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 OR2T7P0C7T2 308 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 HCCSP53701 268 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 ROM1Q03395 351 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 ZNF322Q6U7Q0 402 aaPredicted RBP16.37■□□□□ 0.21
UPF1-212ENST00000601689 BCDIN3DQ7Z5W3 292 aaKnown RBP16.37■□□□□ 0.21
UPF1-212ENST00000601689 GLCCI1Q86VQ1 547 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 COMMD2Q86X83 199 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 MUC20Q8N307 709 aaPredicted RBP16.37■□□□□ 0.21
UPF1-212ENST00000601689 PLPP7Q8NBV4 271 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 OR2T27Q8NH04 317 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 OR51F2Q8NH61 342 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 RDH12Q96NR8 316 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 BEX2Q9BXY8 128 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 MOB1AQ9H8S9 216 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 FN3KRPQ9HA64 309 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 ADGRL4Q9HBW9 690 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 GCM1Q9NP62 436 aa16.37■□□□□ 0.21
UPF1-212ENST00000601689 H0YL77 283 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 MLNRO43193 412 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 CRLF1O75462 422 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 CD200P41217 278 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 PRSS12P56730 875 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 FAM3AP98173 230 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 ZNF181Q2M3W8 571 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 MRPL48Q96GC5 212 aaKnown RBP16.36■□□□□ 0.21
UPF1-212ENST00000601689 ZNF665Q9H7R5 613 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 UBAP1Q9NZ09 502 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 GTF2A1LQ9UNN4 478 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 PCDHGB1Q9Y5G3 927 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 ZFHX3Q15911 3703 aa16.36■□□□□ 0.21
UPF1-212ENST00000601689 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.35■□□□□ 0.218e-9■■■■□ 20.7
UPF1-212ENST00000601689 A0A1B0GWJ7 208 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 PSMD9O00233 223 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 MTRF1O75570 445 aaKnown RBP16.35■□□□□ 0.21
UPF1-212ENST00000601689 GATA4P43694 442 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 GSK3AP49840 483 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 DVL1P1P54792 670 aaPredicted RBP16.35■□□□□ 0.21
UPF1-212ENST00000601689 BTG1P62324 171 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 KCNJ8Q15842 424 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 TMEM155Q4W5P6 130 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms