RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 OR56B2PQ8NGI1 322 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 ITLN1Q8WWA0 313 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 DVL3Q92997 716 aaPredicted RBP12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 ELMOD3Q96FG2 381 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 SIGLEC11Q96RL6 698 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 MROQ9BYG7 248 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 BPESC1Q9GZL8 116 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 NIPAL2Q9H841 368 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 G6PC2Q9NQR9 355 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF275Q9NSD4 429 aaPredicted RBP12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 F8P00451 2351 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 TMEM269A0A1B0GVZ9 245 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 GGT3PA6NGU5 568 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 F5H5P2 479 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 XRCC2O43543 280 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 MPZL2O60487 215 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 APOC1P02654 83 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 ERCC1P07992 297 aaPredicted RBP12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 INHBBP09529 407 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 CA6P23280 308 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 ACKR3P25106 362 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 ATP6V1E1P36543 226 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 CAPGP40121 348 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 PMELP40967 661 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 GSK3AP49840 483 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 RIDAP52758 137 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 AQP4P55087 323 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 EGR3Q06889 387 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 MAB21L1Q13394 359 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 GFOD2Q3B7J2 385 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 TP53I3Q53FA7 332 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 OR52H1Q8NGJ2 320 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 OR52I1Q8NGK6 324 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 OR13G1Q8NGZ3 307 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 TFAP2CQ92754 450 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 PBOV1Q9GZY1 135 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 OR10A2Q9H208 303 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 DECR2Q9NUI1 292 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 TMEM100Q9NV29 134 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 MRPS18AQ9NVS2 196 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 CGGBP1Q9UFW8 167 aaPredicted RBP12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 ZDHHC8Q9ULC8 765 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 SLC22A13Q9Y226 551 aa12.03□□□□□ -0.48
SHKBP1-217ENST00000598558 ACANP16112 2415 aa12.02□□□□□ -0.48
SHKBP1-217ENST00000598558 IGHV1-69-2A0A0G2JMI3 117 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 A0A1B0GTI1 187 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 METTL15A6NJ78 407 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 H0YAE9 185 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 PHYHO14832 338 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 TPD52L2O43399 206 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 RPP14O95059 124 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 ATP6V1G2O95670 118 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 IGLV3-1P01715 115 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 TTRP02766 147 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 MT-ND5P03915 603 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 FOSL1P15407 271 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 PSMB10P40306 273 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 MMP16P51512 607 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 OR12D2P58182 307 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 MRPS11P82912 194 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 RIPK1Q13546 671 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 TIGD6Q17RP2 521 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 C6orf52Q5T4I8 152 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 LIPNQ5VXI9 398 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 LHFPL3Q86UP9 236 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 FBLIM1Q8WUP2 373 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 SPRYD4Q8WW59 207 aaPredicted RBP12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 RORBQ92753 470 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 MEGF10Q96KG7 1140 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 OR2V2Q96R30 315 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 FGF23Q9GZV9 251 aaPredicted RBP12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 SAP30LQ9HAJ7 183 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 MYOZ1Q9NP98 299 aaPredicted RBP12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 NUFIP1Q9UHK0 495 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 R4GMQ9 66 aa12.02□□□□□ -0.49
SHKBP1-217ENST00000598558 FLNAP21333 2647 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 LRP5LA4QPB2 252 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 ACOD1A6NK06 481 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 H0YHG0 523 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 NDUFS8O00217 210 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 LY6G6DO95868 133 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 IGHA1P01876 353 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 CSF3P09919 207 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 SLC25A16P16260 332 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 ACHEP22303 614 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 IL2RGP31785 369 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 HOXA4Q00056 320 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 MVKQ03426 396 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 LOXL1Q08397 574 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 OR8B8Q15620 311 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 Q71RC1 249 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 PRSS35Q8N3Z0 413 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 YIPF7Q8N8F6 280 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 OR51E1Q8TCB6 317 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 Q96MT0 163 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 DIRC2Q96SL1 478 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 PIMREGQ9BSJ6 248 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 SP140LQ9H930 580 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 ISG20L2Q9H9L3 353 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 CHODLQ9H9P2 273 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms