RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SEMA6DQ8NFY4 1073 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 OR13C5Q8NGS8 318 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 SPSB4Q96A44 273 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 FGGYQ96C11 551 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 TRMT61AQ96FX7 289 aaKnown RBP13.2□□□□□ -0.3
TRIM28-209ENST00000597423 BCL2L14Q9BZR8 327 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 FOXJ3Q9UPW0 622 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 IGHV1-18A0A0C4DH31 117 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 A0A1W2PPK0 400 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 A0A1W2PPW3 197 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 CLDN14O95500 239 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 PRB1P04280 392 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 ERCC1P07992 297 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-209ENST00000597423 CELA3BP08861 270 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 ZNF35P13682 527 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 SDC2P34741 201 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 DDOSTP39656 456 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 HGFACQ04756 655 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 INSL4Q14641 139 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 GLYATL3Q5SZD4 288 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 ZBTB37Q5TC79 503 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 Q6ZSR3 168 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 FTMTQ8N4E7 242 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 PARP16Q8N5Y8 322 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 OR51A4Q8NGJ6 313 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 OR10AC1Q8NH08 325 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 NDNFQ8TB73 568 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 STARD10Q9Y365 291 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 V9GYS6 101 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 NCOA6Q14686 2063 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-209ENST00000597423 NBEAQ8NFP9 2946 aa13.19□□□□□ -0.3
TRIM28-209ENST00000597423 NKX2-6A6NCS4 301 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 GGT3PA6NGU5 568 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 VSTM5A8MXK1 200 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 MAGEB3O15480 346 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 TMEM127O75204 238 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 SELEP16581 610 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 NAAAQ02083 359 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 WFDC8Q8IUA0 241 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 CSNK2A3Q8NEV1 391 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 OR14K1Q8NGZ2 314 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 PP6455Q8WZ26 134 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 AP3S1Q92572 193 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 DCUN1D5Q9BTE7 237 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 REPIN1Q9BWE0 567 aaKnown RBP13.18□□□□□ -0.3
TRIM28-209ENST00000597423 RNF167Q9H6Y7 350 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 PTTG2Q9NZH5 202 aa13.18□□□□□ -0.3
TRIM28-209ENST00000597423 IGHV2OR16-5A0A0B4J2B6 119 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 H3BSH0 61 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 NGFP01138 241 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 OCMP0CE72 109 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-209ENST00000597423 EPXP11678 715 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 ZNF182P17025 639 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-209ENST00000597423 RAB3BP20337 219 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 THBS4P35443 961 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 RPS19P39019 145 aaKnown RBP13.17□□□□□ -0.3
TRIM28-209ENST00000597423 WNT5AP41221 380 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 GSK3AP49840 483 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 PPP1CBP62140 327 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 RPS23P62266 143 aaKnown RBP13.17□□□□□ -0.3
TRIM28-209ENST00000597423 ZNF92Q03936 586 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 SEZ6L2Q6UXD5 910 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 PAQR4Q8N4S7 273 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-209ENST00000597423 OR1J1Q8NGS3 322 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 DYNC2LI1Q8TCX1 351 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 SLC25A46Q96AG3 418 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 ZC3HAV1LQ96H79 300 aaKnown RBP13.17□□□□□ -0.3
TRIM28-209ENST00000597423 LYZL4Q96KX0 146 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 WFIKKN1Q96NZ8 548 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 TPK1Q9H3S4 243 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 ZCCHC4Q9H5U6 513 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 ESRP2Q9H6T0 727 aaKnown RBP13.17□□□□□ -0.3
TRIM28-209ENST00000597423 PTTG3PQ9NZH4 202 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 CCDC59Q9P031 241 aaKnown RBP13.17□□□□□ -0.3
TRIM28-209ENST00000597423 PIGLQ9Y2B2 252 aa13.17□□□□□ -0.3
TRIM28-209ENST00000597423 COL6A6A6NMZ7 2263 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 IGSF10Q6WRI0 2623 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 TUBAL3A6NHL2 446 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 PIN1P1O15428 100 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 ZG16O60844 167 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 SMPD2O60906 423 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 RAC2P15153 192 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 FSTP19883 344 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 RAB3AP20336 220 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 CD40P25942 277 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 CCKARP32238 428 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 MAGEB1P43366 347 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 FAM3AP98173 230 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 MXD1Q05195 221 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 GK2Q14410 553 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-209ENST00000597423 ZNF718Q3SXZ3 478 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 FAM27D1Q5T7N8 215 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 FBXW12Q6X9E4 464 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 OR2AE1Q8NHA4 323 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 ITLN2Q8WWU7 325 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-209ENST00000597423 FOXRED1Q96CU9 486 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-209ENST00000597423 RADILQ96JH8 1075 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 DACH2Q96NX9 599 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 TECTBQ96PL2 329 aa13.16□□□□□ -0.3
TRIM28-209ENST00000597423 PPIL3Q9H2H8 161 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms