RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MUCL1Q96DR8 90 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 PERPQ96FX8 193 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 ZNF799Q96GE5 643 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 C4orf45Q96LM5 186 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 NIPAL2Q9H841 368 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 TRIM36Q9NQ86 728 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 YAE1D1Q9NRH1 226 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 OR52A1Q9UKL2 312 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 SF3B6Q9Y3B4 125 aaKnown RBP8.14□□□□□ -1.11
TRIM28-208ENST00000597172 TRBV2A0A0J9YWF9 115 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 PNMA8CA0A1B0GUJ8 204 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 ACOD1A6NK06 481 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 CD1AP06126 327 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 SLC2A1P11166 492 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 PPP3CBP16298 524 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 PAX7P23759 505 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 CALCRP30988 508 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 APLNRP35414 380 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 TGFBR2P37173 567 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 RGS6P49758 472 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 GDI2P50395 445 aaKnown RBP8.13□□□□□ -1.11
TRIM28-208ENST00000597172 ZNF83P51522 516 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 CCR9P51686 369 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 PSMA6P60900 246 aaKnown RBP8.13□□□□□ -1.11
TRIM28-208ENST00000597172 SORDQ00796 357 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 GPR50Q13585 617 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 C3orf36Q3SXR2 165 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 LIPKQ5VXJ0 399 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 ALKBH2Q6NS38 261 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 DRAM2Q6UX65 266 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 ELMOD2Q8IZ81 293 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 RDH10Q8IZV5 341 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 GHSRQ92847 366 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 SPTSSAQ969W0 71 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 YIPF6Q96EC8 236 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 ZC3HAV1LQ96H79 300 aaKnown RBP8.13□□□□□ -1.11
TRIM28-208ENST00000597172 PGLYRP3Q96LB9 341 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 DOK1Q99704 481 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 PDCD1LG2Q9BQ51 273 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 C1QTNF5Q9BXJ0 243 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 PBOV1Q9GZY1 135 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 VCX3AQ9NNX9 186 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 BRD7Q9NPI1 651 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 CDC42EP3Q9UKI2 254 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 N6AMT1Q9Y5N5 214 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 RYR3Q15413 4870 aa8.13□□□□□ -1.11
TRIM28-208ENST00000597172 A0A1B0GTI1 187 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 DPRXA6NFQ7 191 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 LOC110117498-PIK3R3F6TDL0 507 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 M0R1B8 84 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 ZFPL1O95159 310 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 NGFP01138 241 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 IGLV3-1P01715 115 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 APOC1P02654 83 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 TTRP02766 147 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 ANXA2P07355 339 aaKnown RBP8.12□□□□□ -1.11
TRIM28-208ENST00000597172 CCNOP22674 350 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 TAS2R43P59537 309 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 RPS11P62280 158 aaKnown RBP eCLIP8.12□□□□□ -1.11
TRIM28-208ENST00000597172 RPS25P62851 125 aaKnown RBP8.12□□□□□ -1.11
TRIM28-208ENST00000597172 SRSF2Q01130 221 aaKnown RBP8.12□□□□□ -1.11
TRIM28-208ENST00000597172 SLC3A1Q07837 685 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 ZNF829Q3KNS6 432 aaPredicted RBP8.12□□□□□ -1.11
TRIM28-208ENST00000597172 SNAI3Q3KNW1 292 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 ARL9Q6T311 187 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 FAM57BQ71RH2 274 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 SATL1Q86VE3 508 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 WFDC8Q8IUA0 241 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 OR8B12Q8NGG6 310 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 OR1J2Q8NGS2 313 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 HAVCR2Q8TDQ0 301 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 RGP1Q92546 391 aaPredicted RBP8.12□□□□□ -1.11
TRIM28-208ENST00000597172 UFD1Q92890 307 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 SGK3Q96BR1 496 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 SMIM19Q96E16 107 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 LRRC46Q96FV0 321 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 LYZL4Q96KX0 146 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 DCLRE1CQ96SD1 692 aaKnown RBP8.12□□□□□ -1.11
TRIM28-208ENST00000597172 SOX7Q9BT81 388 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 MED18Q9BUE0 208 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 POFUT1Q9H488 388 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 NUFIP1Q9UHK0 495 aaKnown RBP8.12□□□□□ -1.11
TRIM28-208ENST00000597172 STARD10Q9Y365 291 aa8.12□□□□□ -1.11
TRIM28-208ENST00000597172 TRRAPQ9Y4A5 3859 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 IGHV2OR16-5A0A0B4J2B6 119 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 A0A1W2PPR1 153 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 DPPA5A6NC42 116 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 TUBAL3A6NHL2 446 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 H3BSA7 217 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 P2RY10O00398 339 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 CCRL2O00421 344 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 ICMTO60725 284 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 GOSR1O95249 250 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 LCATP04180 440 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 ISG15P05161 165 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 CD36P16671 472 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 EGR1P18146 543 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 CD40P25942 277 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 CFPP27918 469 aa8.11□□□□□ -1.11
TRIM28-208ENST00000597172 CRYBB2P43320 205 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms