RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 CYB5R2Q6BCY4 276 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 ZNF322Q6U7Q0 402 aaPredicted RBP12.31□□□□□ -0.44
VRK3-206ENST00000594090 OR8B12Q8NGG6 310 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 CLDND2Q8NHS1 167 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 HPS1Q92902 700 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 SGK3Q96BR1 496 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 RDH12Q96NR8 316 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 SOX7Q9BT81 388 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 ADAT1Q9BUB4 502 aaKnown RBP12.31□□□□□ -0.44
VRK3-206ENST00000594090 TMEM106BQ9NUM4 274 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 FAM206AQ9NX38 181 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 MRPL15Q9P015 296 aaKnown RBP12.31□□□□□ -0.44
VRK3-206ENST00000594090 NOP16Q9Y3C1 178 aaKnown RBP12.31□□□□□ -0.44
VRK3-206ENST00000594090 WIPI2Q9Y4P8 454 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 LOC100130705A0A1B0GUX0 176 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 INAFM1C9JVW0 142 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 ZNF670-ZNF695F2Z2N8 137 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 F5H5P2 479 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 ENTPD6O75354 484 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 APOL3O95236 402 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 CA6P23280 308 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 DCTDP32321 178 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 RIDAP52758 137 aaKnown RBP12.3□□□□□ -0.44
VRK3-206ENST00000594090 RIPPLY3P57055 190 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 MSI2Q96DH6 328 aaKnown RBP12.3□□□□□ -0.44
VRK3-206ENST00000594090 TIMD4Q96H15 378 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 TBX5Q99593 518 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 SLC22A4Q9H015 551 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 RGCCQ9H4X1 137 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 GCM1Q9NP62 436 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 FAM118AQ9NWS6 357 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 DCAF16Q9NXF7 216 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 SMPD3Q9NY59 655 aaPredicted RBP12.3□□□□□ -0.44
VRK3-206ENST00000594090 PPP1R3CQ9UQK1 317 aa12.3□□□□□ -0.44
VRK3-206ENST00000594090 ERICH4A6NGS2 130 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 DLGAP1O14490 977 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 GABRB1P18505 474 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 PEX2P28328 305 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 RBMXP38159 391 aaKnown RBP12.29□□□□□ -0.44
VRK3-206ENST00000594090 DDOSTP39656 456 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 CD200P41217 278 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 MMP16P51512 607 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 EGR3Q06889 387 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 OR8G1Q15617 311 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 OCLNQ16625 522 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 LRRC36Q1X8D7 754 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 ZNF829Q3KNS6 432 aaPredicted RBP12.29□□□□□ -0.44
VRK3-206ENST00000594090 MEDAGQ5VYS4 303 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 LPCAT4Q643R3 524 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 SSX6Q7RTT6 188 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 ENTHD1Q8IYW4 607 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 GALNT4Q8N4A0 578 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 RAB1CQ92928 201 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 LYZL4Q96KX0 146 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 SIGLEC11Q96RL6 698 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 APOL4Q9BPW4 351 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 YAE1D1Q9NRH1 226 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 AASSQ9UDR5 926 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.29□□□□□ -0.44
VRK3-206ENST00000594090 DYSFO75923 2080 aa12.29□□□□□ -0.44
VRK3-206ENST00000594090 IGHV3-64DA0A0J9YX35 117 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 TMEM269A0A1B0GVZ9 245 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 A0A1W2PQL4 384 aaPredicted RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 ACOD1A6NK06 481 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 A8MV72 311 aaPredicted RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 SLC16A6O15403 523 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 MAGEB4O15481 346 aaPredicted RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 SRSF10O75494 262 aaKnown RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 OR2T7P0C7T2 308 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 ATP6V1E1P36543 226 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 GATA4P43694 442 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 MTNR1AP48039 350 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 GSK3AP49840 483 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 MFGE8Q08431 387 aaPredicted RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 MAB21L1Q13394 359 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 OR8B8Q15620 311 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 PEG10Q86TG7 708 aaKnown RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 CELF2-AS1Q8N7Q2 184 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 OR10H4Q8NGA5 316 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 OR2T27Q8NH04 317 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 ZNF420Q8TAQ5 688 aaPredicted RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 DVL3Q92997 716 aaPredicted RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 C1orf159Q96HA4 380 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 C8orf4Q9NR00 106 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 MRM2Q9UI43 246 aaKnown RBP12.28□□□□□ -0.44
VRK3-206ENST00000594090 ZNF391Q9UJN7 358 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 NPTNQ9Y639 398 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 ABCA1O95477 2261 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 A0A0U1RQV5 110 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 ANKRD30BLA7E2S9 258 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 LOC110117498-PIK3R3F6TDL0 507 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 IFNL4K9M1U5 179 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 MPZL2O60487 215 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 GMDSO60547 372 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 IGHV2-70P01814 119 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 CDH15P55291 814 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 LMO4P61968 165 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 ZNF181Q2M3W8 571 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 FAM166AQ6J272 317 aa12.28□□□□□ -0.44
VRK3-206ENST00000594090 PLEKHG7Q6ZR37 379 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms