RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	THBS4	P35443	961 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	ACAA2	P42765	397 aa	Known RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	CDKN2A	P42771	156 aa	Known RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	CSNK1A1	P48729	337 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	LCN6	P62502	163 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	HTRA3	P83110	453 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	H3F3A	P84243	136 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	ACY1	Q03154	408 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	KIAA0141	Q14154	515 aa	Predicted RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	SLC22A6	Q4U2R8	563 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	ZNF658B	Q4V348	819 aa	Predicted RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	VAX1	Q5SQQ9	334 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	RPUSD3	Q6P087	351 aa	Known RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	PLXDC2	Q6UX71	529 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	TTLL10	Q6ZVT0	673 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	LRRTM1	Q86UE6	522 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	PLPP5	Q8NEB5	264 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	MARCH1	Q8TCQ1	289 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	ATOH1	Q92858	354 aa	Predicted RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	SLAMF6	Q96DU3	332 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	FAM71F1	Q96KD3	344 aa	Predicted RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	VSTM2L	Q96N03	204 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	PAPOLG	Q9BWT3	736 aa	Known RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	CHRD	Q9H2X0	955 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	ZNF768	Q9H5H4	540 aa	Known RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	CDCP1	Q9H5V8	836 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	ACKR4	Q9NPB9	350 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	LRFN1	Q9P244	771 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	PADI1	Q9ULC6	663 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	WASF3	Q9UPY6	502 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	COA3	Q9Y2R0	106 aa	Predicted RBP	3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	HCFC2	Q9Y5Z7	792 aa		3.18	□□□□□ -1.9
VMP1-216	ENST00000592790	RNF212B	A8MTL3	300 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	VSTM5	A8MXK1	200 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	AGPAT2	O15120	278 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	PRICKLE3	O43900	615 aa	Predicted RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SEMA7A	O75326	666 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	TK1	P04183	234 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	HEXA	P06865	529 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	NGFR	P08138	427 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	ADRA2A	P08913	450 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	CD63	P08962	238 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	CELA3A	P09093	270 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SEC11B	P0C7V7	166 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SMIM10L1	P0DMW3	83 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	PVR	P15151	417 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	HIST1H1D	P16402	221 aa	Known RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	NPY4R	P50391	375 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SNU13	P55769	128 aa	Known RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	HBG1	P69891	147 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	HBG2	P69892	147 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	HSF1	Q00613	529 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	MELK	Q14680	651 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	GUCA2B	Q16661	112 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	C1orf100	Q5SVJ3	147 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	NKAIN2	Q5VXU1	208 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	KIAA0895L	Q68EN5	471 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	JMJD6	Q6NYC1	403 aa	Predicted RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	KCNIP4	Q6PIL6	250 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	BOLL	Q8N9W6	283 aa	Known RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SLC38A9	Q8NBW4	561 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	TSTD1	Q8NFU3	115 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	LMX1A	Q8TE12	382 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	DOK4	Q8TEW6	326 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	GLYATL2	Q8WU03	294 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	ZNF296	Q8WUU4	475 aa	Predicted RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	FGF11	Q92914	225 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	GCDH	Q92947	438 aa	Predicted RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	MALSU1	Q96EH3	234 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SMIM10	Q96HG1	83 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	TSPAN32	Q96QS1	320 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	PRRX2	Q99811	253 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	PBOV1	Q9GZY1	135 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	TOLLIP	Q9H0E2	274 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SLC35B3	Q9H1N7	401 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	C12orf49	Q9H741	205 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	ZNF442	Q9H7R0	627 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SIRT7	Q9NRC8	400 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	GAR1	Q9NY12	217 aa	Known RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	VSX1	Q9NZR4	365 aa	Predicted RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	PIPOX	Q9P0Z9	390 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	DKKL1	Q9UK85	242 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	SLC22A13	Q9Y226	551 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	FBXO7	Q9Y3I1	522 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	CHTOP	Q9Y3Y2	248 aa	Known RBP	3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	TCRBV21S2A2	A0A5A6	115 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	ANKUB1	A6NFN9	424 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	LILRA5	A6NI73	299 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	ALG1L2	C9J202	215 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790		C9J4A7	227 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	ZNF587B	E7ETH6	402 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790		H7C1Q1	480 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	AP4M1	O00189	453 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	CYR61	O00622	381 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	CA11	O75493	328 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	AKR7A3	O95154	331 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	EPPIN	O95925	133 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	EFEMP2	O95967	443 aa		3.17	□□□□□ -1.9
VMP1-216	ENST00000592790	ZBTB25	P24278	435 aa		3.17	□□□□□ -1.9

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