RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CYP3A43Q9HB55 503 aa2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 RRAGDQ9NQL2 400 aaPredicted RBP2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 DYRK4Q9NR20 520 aa2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 SIRT7Q9NRC8 400 aa2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 OPN4Q9UHM6 478 aa2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 DDX19BQ9UMR2 479 aa2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 COMMD3-BMI1R4GMX3 469 aa2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 ZNFX1Q9P2E3 1918 aaKnown RBP2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 GPATCH8Q9UKJ3 1502 aaKnown RBP2.22□□□□□ -2.05
SMCHD1-209ENST00000583441 PIKFYVEQ9Y2I7 2098 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 CENPVL3A0A0U1RRI6 287 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 C7orf66A4D0T2 115 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 TMEM150BA6NC51 233 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 LRCOL1A6NCL2 159 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 TNFRSF11BO00300 401 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 EIF1BO60739 113 aaKnown RBP2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 FOXH1O75593 365 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 SNAI1O95863 264 aaPredicted RBP2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 PTHP01270 115 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 IGHV3-11P01762 117 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 CD74P04233 296 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 LINC00869P0C866 280 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 IL1RNP18510 177 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 EIF1P41567 113 aaKnown RBP2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 ERFP50548 548 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 BCAP31P51572 246 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 PSMD4P55036 377 aaKnown RBP2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 TAS2R46P59540 309 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 OR2B8PP59922 312 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 IFITM3Q01628 133 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 PNOCQ13519 176 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 PIGHQ14442 188 aaPredicted RBP2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 STK38Q15208 465 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 GABRA6Q16445 453 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 COX19Q49B96 90 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 GCSAMLQ5JQS6 135 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 IGFL3Q6UXB1 125 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 MRPL21Q7Z2W9 205 aaKnown RBP2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 ZNF461Q8TAF7 563 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 LINC01560Q8TB33 94 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 ASZ1Q8WWH4 475 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 ISOC2Q96AB3 205 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 OR10C1Q96KK4 312 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 LINC00477Q96M19 166 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 AGMATQ9BSE5 352 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 EMC6Q9BV81 110 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 SAMD10Q9BYL1 202 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 EXOSC4Q9NPD3 245 aaKnown RBP2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 RHBDD3Q9Y3P4 386 aa2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 CHTOPQ9Y3Y2 248 aaKnown RBP2.21□□□□□ -2.06
SMCHD1-209ENST00000583441 TRAV40A0A0B4J280 105 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 IGKV1-8A0A0C4DH67 115 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 IGHV7-4-1A0A0J9YVY3 117 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 A0A0J9YYE9 177 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 A0A1B0GUH1 482 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 GABRR3A8MPY1 467 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 KRBOX1C9JBD0 128 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 H0YJW9 148 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 ZNF701M0R085 212 aaPredicted RBP2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 NMT2O60551 498 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 GLSO94925 669 aaPredicted RBP2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 SCELO95171 688 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 CCNE2O96020 404 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 OTCP00480 354 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 TRBC1P01850 177 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 PMCHP20382 165 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 GABRR2P28476 465 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 SERPINB8P50452 374 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 TAS2R31P59538 309 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 LCN2P80188 198 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 RBMY1FQ15415 496 aaKnown RBP2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 SNRNP35Q16560 246 aaKnown RBP2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 NKAIN1Q4KMZ8 207 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 MLIPQ5VWP3 458 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 ZNF880Q6PDB4 577 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 SHISA6Q6ZSJ9 500 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 TMEM256Q8N2U0 113 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 ARRDC1Q8N5I2 433 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 TRAM1L1Q8N609 369 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 OR52K1Q8NGK4 314 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 OR5AR1Q8NGP9 310 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 OR1J4Q8NGS1 313 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 RERGQ96A58 199 aaPredicted RBP2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 SCGB3A2Q96PL1 93 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 UQCC2Q9BRT2 126 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 TREX1Q9NSU2 369 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 RHBDL2Q9NX52 303 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 ADA2Q9NZK5 511 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 IFNKQ9P0W0 207 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 TSSC4Q9Y5U2 329 aaPredicted RBP2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 SLIT3O75094 1523 aa2.2□□□□□ -2.06
SMCHD1-209ENST00000583441 PCDH11XQ9BZA7 1347 aa2.19□□□□□ -2.06
SMCHD1-209ENST00000583441 SMIM26A0A096LP01 95 aa2.19□□□□□ -2.06
SMCHD1-209ENST00000583441 A0A1W2PRF3 423 aa2.19□□□□□ -2.06
SMCHD1-209ENST00000583441 A0A1W2PRM7 423 aa2.19□□□□□ -2.06
SMCHD1-209ENST00000583441 ZNF99A8MXY4 864 aaPredicted RBP2.19□□□□□ -2.06
SMCHD1-209ENST00000583441 HACD1B0YJ81 288 aa2.19□□□□□ -2.06
SMCHD1-209ENST00000583441 H3BN98 237 aa2.19□□□□□ -2.06
SMCHD1-209ENST00000583441 UPK1BO75841 260 aa2.19□□□□□ -2.06
SMCHD1-209ENST00000583441 LCA5LO95447 670 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms