RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 Q8TCH9 128 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 DACT3Q96B18 629 aaPredicted RBP17.08■□□□□ 0.32
SHMT1-209ENST00000582653 ASB9Q96DX5 294 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 C1orf147Q96MC9 270 aaPredicted RBP17.08■□□□□ 0.32
SHMT1-209ENST00000582653 DUX5Q96PT3 197 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 FEVQ99581 238 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 ADAT1Q9BUB4 502 aaKnown RBP17.08■□□□□ 0.32
SHMT1-209ENST00000582653 CHID1Q9BWS9 393 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 SOX21Q9Y651 276 aaPredicted RBP17.08■□□□□ 0.32
SHMT1-209ENST00000582653 IGHV2-70DA0A0C4DH43 119 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 RIIAD1A6NNX1 92 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 CST1P01037 141 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 IFNGP01579 166 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 RAP2AP10114 183 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 EIF2B1Q14232 305 aaKnown RBP17.07■□□□□ 0.32
SHMT1-209ENST00000582653 TEX30Q5JUR7 227 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 C9orf139Q6ZV77 190 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 TMEM179BQ7Z7N9 219 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 ADGRG5Q8IZF4 528 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 BOLLQ8N9W6 283 aaKnown RBP17.07■□□□□ 0.32
SHMT1-209ENST00000582653 OR8B3Q8NGG8 313 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 GIPC3Q8TF64 312 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 OTULINQ96BN8 352 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 UPRTQ96BW1 309 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 OR8B2Q96RD0 313 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 THTPAQ9BU02 230 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 CMC2Q9NRP2 79 aa17.07■□□□□ 0.32
SHMT1-209ENST00000582653 DHRS12A0PJE2 317 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 DNAJC9-AS1A6NH13 148 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 ZNF878C9JN71 531 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 H3BN98 237 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 CLDN34H7C241 214 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 GMDSO60547 372 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 RNASE1P07998 156 aaKnown RBP17.06■□□□□ 0.32
SHMT1-209ENST00000582653 IGHV4-38-2P0DP08 117 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 MTNR1AP48039 350 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 PITPNBP48739 271 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 SFRP4Q6FHJ7 346 aaPredicted RBP17.06■□□□□ 0.32
SHMT1-209ENST00000582653 CD300LDQ6UXZ3 194 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 NLRC3Q7RTR2 1065 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 PARP8Q8N3A8 854 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 OR56B2PQ8NGI1 322 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 TEX47Q8TBZ9 253 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 CANT1Q8WVQ1 401 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 SLC25A28Q96A46 364 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 SLC22A4Q9H015 551 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 FN3KRPQ9HA64 309 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 PCDHGB1Q9Y5G3 927 aa17.06■□□□□ 0.32
SHMT1-209ENST00000582653 TBX1O43435 398 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 PLATP00750 562 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 GRPP07492 148 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 ZNF3P17036 446 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 CX3CR1P49238 355 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 SHISA2Q6UWI4 295 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 ZNF841Q6ZN19 808 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 DCDC5Q6ZRR9 648 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 DPY19L4Q7Z388 723 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 ERI1Q8IV48 349 aaKnown RBP17.05■□□□□ 0.32
SHMT1-209ENST00000582653 OR6N2Q8NGY6 317 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 AMELYQ99218 206 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 C1orf21Q9H246 121 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 MRPL15Q9P015 296 aaKnown RBP17.05■□□□□ 0.32
SHMT1-209ENST00000582653 RNF7Q9UBF6 113 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 CLN8Q9UBY8 286 aa17.05■□□□□ 0.32
SHMT1-209ENST00000582653 C3orf80F5H4A9 247 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 PTBP3O95758 552 aaKnown RBP17.04■□□□□ 0.32
SHMT1-209ENST00000582653 ANXA2P07355 339 aaKnown RBP17.04■□□□□ 0.32
SHMT1-209ENST00000582653 POU1F1P28069 291 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 GSTT1P30711 240 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 GRK5P34947 590 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 PSMB10P40306 273 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 BLVRAP53004 296 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 SLC9A3R2Q15599 337 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 WDR25Q64LD2 544 aaPredicted RBP17.04■□□□□ 0.32
SHMT1-209ENST00000582653 ZNF826PQ6ZT77 177 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 SGK3Q96BR1 496 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 INTS14Q96SY0 518 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 NUDT16L1Q9BRJ7 211 aaKnown RBP17.04■□□□□ 0.32
SHMT1-209ENST00000582653 ABHD6Q9BV23 337 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 OR51V1Q9H2C8 321 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 C1orf123Q9NWV4 160 aa17.04■□□□□ 0.32
SHMT1-209ENST00000582653 NOP16Q9Y3C1 178 aaKnown RBP17.04■□□□□ 0.32
SHMT1-209ENST00000582653 GNGT2O14610 69 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 HSD11B1P28845 292 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 SLC15A1P46059 708 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 GRB2P62993 217 aaKnown RBP17.03■□□□□ 0.32
SHMT1-209ENST00000582653 SLC16A9Q7RTY1 509 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 HS3ST5Q8IZT8 346 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 PLPP7Q8NBV4 271 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 SPSB4Q96A44 273 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 MMADHCQ9H3L0 296 aaPredicted RBP17.03■□□□□ 0.32
SHMT1-209ENST00000582653 PPP1R3EQ9H7J1 279 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 DNAJC27Q9NZQ0 273 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 PDP1Q9P0J1 537 aaPredicted RBP17.03■□□□□ 0.32
SHMT1-209ENST00000582653 CTSZQ9UBR2 303 aa17.03■□□□□ 0.32
SHMT1-209ENST00000582653 POM121CA8CG34 1229 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 PHYHO14832 338 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 TMPRSS2O15393 492 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 XRCC2O43543 280 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 GLCEO94923 617 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms