RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 EIF3MQ7L2H7 374 aaKnown RBP2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 C8orf31Q8N9H6 132 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 OR5T1Q8NG75 326 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 OR9G4Q8NGQ1 327 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 PEX13Q92968 403 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 IP6K3Q96PC2 410 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 XPO6Q96QU8 1125 aaKnown RBP2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 UCK2Q9BZX2 261 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 SLC7A5P2Q9GIP4 190 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 SLIRPQ9GZT3 109 aaKnown RBP2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 CRLF2Q9HC73 371 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 AGPAT4Q9NRZ5 378 aa2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 DHCR7Q9UBM7 475 aaKnown RBP2.19□□□□□ -2.06
SMCHD1-204ENST00000581226 UBN2Q6ZU65 1347 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 A6NDN8 102 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 NCF1BA6NI72 391 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 NCF1CA8MVU1 366 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 TNFRSF11BO00300 401 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 AKR7A2O43488 359 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 PLIN3O60664 434 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 GZMAP12544 262 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 CLDN8P56748 225 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 ZNF121P58317 390 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 RPS15AP62244 130 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 FLI1Q01543 452 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 SPAG1Q07617 926 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 PNOCQ13519 176 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 CASP12Q6UXS9 341 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 CENPQQ7L2Z9 268 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 ZNF101Q8IZC7 436 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 ZNF645Q8N7E2 425 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 TMEM104Q8NE00 496 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 OR4M1Q8NGD0 313 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 WDR34Q96EX3 536 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 TMEM243Q9BU79 118 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 LHX5Q9H2C1 402 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 ZSCAN16Q9H4T2 348 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 TMEM38AQ9H6F2 299 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 MRM3Q9HC36 420 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 C20orf96Q9NUD7 363 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 SLC39A1Q9NY26 324 aa2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 RCL1Q9Y2P8 373 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-204ENST00000581226 PCDH11XQ9BZA7 1347 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 IGHV1-3A0A0C4DH29 117 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 IGKV2-24A0A0C4DH68 120 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 KIR2DS1A0A191URI9 304 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 VGLL3A8MV65 326 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 ZNF99A8MXY4 864 aaPredicted RBP2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 H0YIV9 168 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 NMT2O60551 498 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 CBR3O75828 277 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 HPRT1P00492 218 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 BMI1P35226 326 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 TGFBR1P36897 503 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 POLR2IP36954 125 aaKnown RBP2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 OR1G1P47890 313 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 RBX1P62877 108 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 IL18Q14116 193 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 DMC1Q14565 340 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 FAM122BQ7Z309 247 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 SLC35G3Q8N808 338 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 TTC29Q8NA56 475 aaPredicted RBP2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 OR5M1Q8NGP8 315 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 HAUS1Q96CS2 278 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 RHOXF2Q9BQY4 288 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 CHCHD7Q9BUK0 85 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 ZYG11BQ9C0D3 744 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 DHX35Q9H5Z1 703 aaKnown RBP2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 PRSS16Q9NQE7 514 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 CAB39Q9Y376 341 aaPredicted RBP2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 COMMD3-BMI1R4GMX3 469 aa2.17□□□□□ -2.06
SMCHD1-204ENST00000581226 A0A1B0GTQ1 180 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 GOLGA8TH3BQL2 631 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 BCKDKO14874 412 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 CASQ2O14958 399 aaPredicted RBP2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 SIVA1O15304 175 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 FCN3O75636 299 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 CCNB2O95067 398 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 IGKV1D-16P01601 117 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 CLTAP09496 248 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 GABRG2P18507 467 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 TNFSF9P41273 254 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 SLC1A2P43004 574 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 RAB7AP51149 207 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 NDUFA8P51970 172 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 GCSAMLQ5JQS6 135 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 GUSBP11Q6P575 273 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 SPESP1Q6UW49 350 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 MDP1Q86V88 176 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 COMMD1Q8N668 190 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 LRRC75AQ8NAA5 344 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 OR5AR1Q8NGP9 310 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 KLF14Q8TD94 323 aaPredicted RBP2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 GLYATL2Q8WU03 294 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 BTN2A3PQ96KV6 586 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 NCOR1P1Q9H4R4 102 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 CLN6Q9NWW5 311 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 PSME2Q9UL46 239 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 RHBDD3Q9Y3P4 386 aa2.16□□□□□ -2.06
SMCHD1-204ENST00000581226 IGHV3OR16-9A0A0B4J2B5 98 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms