RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 BRD7Q9NPI1 651 aa16.33■□□□□ 0.2
SS18-208ENST00000577751 TMEM106BQ9NUM4 274 aa16.33■□□□□ 0.2
SS18-208ENST00000577751 IMPAD1Q9NX62 359 aa16.33■□□□□ 0.2
SS18-208ENST00000577751 MRPL15Q9P015 296 aaKnown RBP16.33■□□□□ 0.2
SS18-208ENST00000577751 WIPI2Q9Y4P8 454 aa16.33■□□□□ 0.2
SS18-208ENST00000577751 ABCA2Q9BZC7 2435 aa16.33■□□□□ 0.2
SS18-208ENST00000577751 SETD2Q9BYW2 2564 aaPredicted RBP16.33■□□□□ 0.2
SS18-208ENST00000577751 hCG_38984A0A1B0GV85 526 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 ACOD1A6NK06 481 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 INAFM1C9JVW0 142 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 F5H5P2 479 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 PSMD9O00233 223 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 PHYHO14832 338 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 HLA-DPB1P04440 258 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 ANPEPP15144 967 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 CFL1P23528 166 aaKnown RBP16.32■□□□□ 0.2
SS18-208ENST00000577751 SRP9P49458 86 aaKnown RBP16.32■□□□□ 0.2
SS18-208ENST00000577751 CXCR4P61073 352 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 POU4F2Q12837 409 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 MAB21L1Q13394 359 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 CELF2-AS1Q8N7Q2 184 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 RAB1CQ92928 201 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 PGAM5Q96HS1 289 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 YAE1D1Q9NRH1 226 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 DCAF16Q9NXF7 216 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 PPP1R3CQ9UQK1 317 aa16.32■□□□□ 0.2
SS18-208ENST00000577751 MALRD1Q5VYJ5 2156 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 A8MV72 311 aaPredicted RBP16.31■□□□□ 0.2
SS18-208ENST00000577751 DLGAP1O14490 977 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 GMDSO60547 372 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 GABRB1P18505 474 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 CA6P23280 308 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 CD200P41217 278 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 LMO4P61968 165 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 MVKQ03426 396 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 EGR3Q06889 387 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 HNRNPA0Q13151 305 aaKnown RBP16.31■□□□□ 0.2
SS18-208ENST00000577751 RCN1Q15293 331 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 OCLNQ16625 522 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 AVPI1Q5T686 147 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 ZNF322Q6U7Q0 402 aaPredicted RBP16.31■□□□□ 0.2
SS18-208ENST00000577751 OR8B12Q8NGG6 310 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 OR56B2PQ8NGI1 322 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 TIMD4Q96H15 378 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 RDH12Q96NR8 316 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 SIGLEC11Q96RL6 698 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 FAM118AQ9NWS6 357 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 FAM206AQ9NX38 181 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 NOP16Q9Y3C1 178 aaKnown RBP16.31■□□□□ 0.2
SS18-208ENST00000577751 GMPPBQ9Y5P6 360 aa16.31■□□□□ 0.2
SS18-208ENST00000577751 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.3■□□□□ 0.28e-11■■■■■ 40.5
SS18-208ENST00000577751 LOC100130705A0A1B0GUX0 176 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 ZNF670-ZNF695F2Z2N8 137 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 IFNL4K9M1U5 179 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 SLC16A6O15403 523 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 ENTPD6O75354 484 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 PTBP3O95758 552 aaKnown RBP16.3■□□□□ 0.2
SS18-208ENST00000577751 OR2T7P0C7T2 308 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 ZNF16P17020 682 aaPredicted RBP16.3■□□□□ 0.2
SS18-208ENST00000577751 GATA4P43694 442 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 MMP16P51512 607 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 RIDAP52758 137 aaKnown RBP16.3■□□□□ 0.2
SS18-208ENST00000577751 OR8B8Q15620 311 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 ZNF181Q2M3W8 571 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 MEDAGQ5VYS4 303 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 OR2T27Q8NH04 317 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 TTTY10Q9BZA0 68 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 NARFLQ9H6Q4 476 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 ZNF391Q9UJN7 358 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 IKZF2Q9UKS7 526 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.3■□□□□ 0.2
SS18-208ENST00000577751 NPTNQ9Y639 398 aa16.3■□□□□ 0.2
SS18-208ENST00000577751 A0A0U1RQV5 110 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 TMEM269A0A1B0GVZ9 245 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 SRSF10O75494 262 aaKnown RBP16.29■□□□□ 0.2
SS18-208ENST00000577751 IGHV2-70P01814 119 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 RBMXP38159 391 aaKnown RBP16.29■□□□□ 0.2
SS18-208ENST00000577751 MTNR1AP48039 350 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 GSK3AP49840 483 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 CDH15P55291 814 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 OR8G1Q15617 311 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 SSX6Q7RTT6 188 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 PEG10Q86TG7 708 aaKnown RBP16.29■□□□□ 0.2
SS18-208ENST00000577751 KLBQ86Z14 1044 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 ERGIC1Q969X5 290 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 LYZL4Q96KX0 146 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 APOL4Q9BPW4 351 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 C8orf4Q9NR00 106 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 TMEM160Q9NX00 188 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 SMPD3Q9NY59 655 aaPredicted RBP16.29■□□□□ 0.2
SS18-208ENST00000577751 MRM2Q9UI43 246 aaKnown RBP16.29■□□□□ 0.2
SS18-208ENST00000577751 NF1P21359 2839 aa16.29■□□□□ 0.2
SS18-208ENST00000577751 LOC100289279A0A1B0GTE1 492 aa16.28■□□□□ 0.2
SS18-208ENST00000577751 A0A1W2PQL4 384 aaPredicted RBP16.28■□□□□ 0.2
SS18-208ENST00000577751 TMEM178BH3BS89 294 aa16.28■□□□□ 0.2
SS18-208ENST00000577751 MAGEB4O15481 346 aaPredicted RBP16.28■□□□□ 0.2
SS18-208ENST00000577751 PNPP00491 289 aa16.28■□□□□ 0.2
SS18-208ENST00000577751 IGLV3-1P01715 115 aa16.28■□□□□ 0.2
SS18-208ENST00000577751 PMELP40967 661 aa16.28■□□□□ 0.2
SS18-208ENST00000577751 GFOD2Q3B7J2 385 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms