RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 C12orf45Q8N5I9 185 aaPredicted RBP8.9□□□□□ -0.98
VPS53-220ENST00000576149 CHST4Q8NCG5 386 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 OR2Y1Q8NGV0 311 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 MARVELD3Q96A59 401 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 INTS12Q96CB8 462 aaKnown RBP8.9□□□□□ -0.98
VPS53-220ENST00000576149 GSX2Q9BZM3 304 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 PRDM6Q9NQX0 595 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 CTSSP25774 331 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 S100A11P31949 105 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 ZNF133P52736 654 aaPredicted RBP8.9□□□□□ -0.99
VPS53-220ENST00000576149 RAB14P61106 215 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 ODF1Q14990 250 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 SCGB2B2Q4G0G5 96 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 RNASE10Q5GAN6 216 aaKnown RBP8.9□□□□□ -0.99
VPS53-220ENST00000576149 NHLRC3Q5JS37 347 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 C10orf128Q5T292 105 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 B3GNTL1Q67FW5 361 aaPredicted RBP8.9□□□□□ -0.99
VPS53-220ENST00000576149 C11orf88Q6PI97 169 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 C3P1Q6ZMU1 363 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 Q7L0L9 218 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 RNF144BQ7Z419 303 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 DTWD2Q8NBA8 298 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 OR10R2Q8NGX6 335 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 TMEM54Q969K7 222 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 PRRT1Q99946 306 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 TMUB1Q9BVT8 246 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 ZNF416Q9BWM5 594 aa8.9□□□□□ -0.99
VPS53-220ENST00000576149 PHF3Q92576 2039 aaKnown RBP8.9□□□□□ -0.99
VPS53-220ENST00000576149 TUBAL3A6NHL2 446 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 ARPC5O15511 151 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 EIF1BO60739 113 aaKnown RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 VAMP5O95183 116 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 CER1O95813 267 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 CHRM2P08172 466 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 GNB3P16520 340 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 CSNK1A1P48729 337 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 CXADRP78310 365 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 DHRS2Q13268 280 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 HLXQ14774 488 aaPredicted RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 ZMYND11Q15326 602 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 SGCAQ16586 387 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 NKPD1Q17RQ9 610 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 LY6G6FQ5SQ64 297 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 RAET1LQ5VY80 246 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 FAM57BQ71RH2 274 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 DOK3Q7L591 496 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 OR2W3Q7Z3T1 314 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 CD163Q86VB7 1156 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 RPS19BP1Q86WX3 136 aaKnown RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 GVQW1Q8N7I0 195 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 ZNF283Q8N7M2 679 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 NUDCD2Q8WVJ2 157 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 PCNPQ8WW12 178 aaKnown RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 FAM71F1Q96KD3 344 aaPredicted RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 C1orf147Q96MC9 270 aaPredicted RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 SPACA5Q96QH8 159 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 LPAR5Q9H1C0 372 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 WDFY3Q8IZQ1 3526 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 FXYD6-FXYD2A0A087WZ82 144 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 NSG1A0A0A6YYJ2 146 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 LAMTOR5O43504 91 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 MSR1P21757 451 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 ARHGDIBP52566 201 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 MLF1P58340 268 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 GMFBP60983 142 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 SLC22A6Q4U2R8 563 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 TOR2AQ5JU69 321 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 PHYHD1Q5SRE7 291 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 CLVS2Q5SYC1 327 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 OR52W1Q6IF63 320 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 GLIPR1L1Q6UWM5 242 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 FOXL2NBQ6ZUU3 175 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 TMUB2Q71RG4 321 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 ZNF101Q8IZC7 436 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 MAML2Q8IZL2 1156 aaPredicted RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 ARMC10Q8N2F6 343 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 TMEM156Q8N614 296 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 OR14K1Q8NGZ2 314 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 ZNF385AQ96PM9 386 aaKnown RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 NICN1Q9BSH3 213 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 SELENOIQ9C0D9 397 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 FXYD6Q9H0Q3 95 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 NELFAQ9H3P2 528 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 ZNF160Q9HCG1 818 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 COLQQ9Y215 455 aaPredicted RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 VSIG4Q9Y279 399 aa8.89□□□□□ -0.99
VPS53-220ENST00000576149 MRPS28Q9Y2Q9 187 aaKnown RBP8.89□□□□□ -0.99
VPS53-220ENST00000576149 A0A0A6YYD4 124 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 IGHV3-15A0A0B4J1V0 119 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 E9PLN8 166 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 G3V3Y1 287 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 MASP2O00187 686 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 SSX5O60225 188 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 IGLV3-1P01715 115 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 CSN2P05814 226 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 CD63P08962 238 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 RRASP10301 218 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 GUCA1AP43080 201 aaPredicted RBP8.88□□□□□ -0.99
VPS53-220ENST00000576149 AP2S1P53680 142 aaPredicted RBP8.88□□□□□ -0.99
VPS53-220ENST00000576149 ENDOGQ14249 297 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms