RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SPRYD4Q8WW59 207 aaPredicted RBP12.74□□□□□ -0.37
VPS53-218ENST00000575207 AKR1E2Q96JD6 320 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 DNTTIP1Q9H147 329 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 RNPEPL1Q9HAU8 725 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 SLC25A10Q9UBX3 287 aaPredicted RBP12.74□□□□□ -0.37
VPS53-218ENST00000575207 ATPIF1Q9UII2 106 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 PGA5P0DJD9 388 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 IGHV4-30-4P0DP06 118 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 GP9P14770 177 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 COX7A1P24310 79 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 AQP2P41181 271 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 CCT5P48643 541 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 LRRC74AQ0VAA2 488 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 PCLAFQ15004 111 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 STUMQ69YW2 141 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 PLBD1Q6P4A8 553 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 ZNF613Q6PF04 617 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 OR4Q3Q8NH05 313 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 LIN7BQ9HAP6 207 aa12.73□□□□□ -0.37
VPS53-218ENST00000575207 DMBT1Q9UGM3 2413 aaPredicted RBP12.72□□□□□ -0.37
VPS53-218ENST00000575207 NPIPB13A6NJU9 1138 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 NPIPB4C9JG80 1138 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 FAM153BP0C7A2 387 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 NDUFB7P17568 137 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 OR3A4PP47883 348 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 AQP6Q13520 282 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 SEC23BQ15437 767 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 DGUOKQ16854 277 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 ZNF788Q6ZQV5 615 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 MZB1Q8WU39 189 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 LRRC29Q8WV35 223 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 MAL2Q969L2 176 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 SEH1LQ96EE3 360 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 OR52E6Q96RD3 313 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 WFDC6Q9BQY6 131 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 TXNIPQ9H3M7 391 aa12.72□□□□□ -0.37
VPS53-218ENST00000575207 SIRT4Q9Y6E7 314 aaPredicted RBP12.72□□□□□ -0.37
VPS53-218ENST00000575207 A0A1W2PPM1 405 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 RFXANKO14593 260 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 AMY1AP04745 511 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 AMY2AP04746 511 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 NUDT7P0C024 238 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 JUNBP17275 347 aaPredicted RBP12.71□□□□□ -0.37
VPS53-218ENST00000575207 SLC25A1P53007 311 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 TOP3AQ13472 1001 aaPredicted RBP12.71□□□□□ -0.37
VPS53-218ENST00000575207 NFYCQ13952 458 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 KIR2DS1Q14954 304 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 C11orf53Q8IXP5 236 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 MED30Q96HR3 178 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 TPT1P8Q9HAU6 139 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 TNCP24821 2201 aa12.71□□□□□ -0.37
VPS53-218ENST00000575207 KIAA2026Q5HYC2 2103 aa12.71□□□□□ -0.38
VPS53-218ENST00000575207 ODF3BA8MYP8 253 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 C5orf58C9J3I9 102 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 SPNP16150 400 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 HAGHQ16775 308 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 DEFB136Q30KP8 78 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 CCDC92Q53HC0 331 aaPredicted RBP12.7□□□□□ -0.38
VPS53-218ENST00000575207 PGAP1Q75T13 922 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 FAM185AQ8N0U4 392 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 OR5T2Q8NGG2 359 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 MOSPD2Q8NHP6 518 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 CAPSLQ8WWF8 208 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 SLCO4A1Q96BD0 722 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 GAFA1Q96PS6 74 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 ST6GALNAC5Q9BVH7 336 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 SPATA5L1Q9BVQ7 753 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 TSPYL1Q9H0U9 437 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 AKTIPQ9H8T0 292 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 ZNF391Q9UJN7 358 aa12.7□□□□□ -0.38
VPS53-218ENST00000575207 GRK5P34947 590 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 ENTPD1P49961 510 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 ZNF429Q86V71 674 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 FAM71E2Q8N5Q1 922 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 COMMD1Q8N668 190 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 PPP1R36Q96LQ0 422 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 ZIM3Q96PE6 472 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 MCHR1Q99705 422 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 ATF6BQ99941 703 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 DCLRE1BQ9H816 532 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 C14orf119Q9NWQ9 140 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 LRP12Q9Y561 859 aa12.69□□□□□ -0.38
VPS53-218ENST00000575207 A0A1B0GVY2 172 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 SH2D7A6NKC9 451 aaPredicted RBP12.68□□□□□ -0.38
VPS53-218ENST00000575207 RER1O15258 196 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 SIGLEC5O15389 551 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 FUT1P19526 365 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 MZT1Q08AG7 82 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 MALLQ13021 153 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 FHL3Q13643 280 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 LCNL1Q6ZST4 164 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 ZNF572Q7Z3I7 529 aaPredicted RBP12.68□□□□□ -0.38
VPS53-218ENST00000575207 KRT73Q86Y46 540 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 VPS33AQ96AX1 596 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 ZNF426Q9BUY5 554 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 RAD21L1Q9H4I0 556 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 ELL3Q9HB65 397 aaPredicted RBP12.68□□□□□ -0.38
VPS53-218ENST00000575207 MEPEQ9NQ76 525 aaPredicted RBP12.68□□□□□ -0.38
VPS53-218ENST00000575207 HAO2Q9NYQ3 351 aa12.68□□□□□ -0.38
VPS53-218ENST00000575207 PSMC3IPQ9P2W1 217 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms