RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 IFNA2P01563 188 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 MYL12AP19105 171 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 ZNF85Q03923 595 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 GALEQ14376 348 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 SMN1Q16637 294 aaKnown RBP17.6■□□□□ 0.41
VPS53-210ENST00000571456 PCGF3Q3KNV8 242 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 MRPL21Q7Z2W9 205 aaKnown RBP17.6■□□□□ 0.41
VPS53-210ENST00000571456 YIPF7Q8N8F6 280 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 OR52I1Q8NGK6 324 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 NEU4Q8WWR8 484 aaPredicted RBP17.6■□□□□ 0.41
VPS53-210ENST00000571456 CMBLQ96DG6 245 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 PGAM5Q96HS1 289 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 TBX5Q99593 518 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 SYT3Q9BQG1 590 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 CHCHD3Q9NX63 227 aaKnown RBP17.6■□□□□ 0.41
VPS53-210ENST00000571456 MRM2Q9UI43 246 aaKnown RBP17.6■□□□□ 0.41
VPS53-210ENST00000571456 PURGQ9UJV8 347 aaKnown RBP17.6■□□□□ 0.41
VPS53-210ENST00000571456 ZDHHC8Q9ULC8 765 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 EXOSC1Q9Y3B2 195 aaKnown RBP17.6■□□□□ 0.41
VPS53-210ENST00000571456 SNX5Q9Y5X3 404 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 R4GMQ9 66 aa17.6■□□□□ 0.41
VPS53-210ENST00000571456 APOL3O95236 402 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 ADH4P08319 380 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 CCDC159P0C7I6 412 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 PSG7Q13046 419 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 GK2Q14410 553 aaPredicted RBP17.59■□□□□ 0.41
VPS53-210ENST00000571456 TIGD6Q17RP2 521 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 MSMPQ1L6U9 139 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 C6orf141Q5SZD1 244 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 SPATA46Q5T0L3 261 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 FAM57BQ71RH2 274 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 NAA40Q86UY6 237 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 FTMTQ8N4E7 242 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 TMEM80Q96HE8 168 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 SLC22A4Q9H015 551 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 FAM206AQ9NX38 181 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 ERVK13-1Q9NX77 482 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 NKIRAS2Q9NYR9 191 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 PTTG3PQ9NZH4 202 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 TAAR3PQ9P1P4 343 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 NUFIP1Q9UHK0 495 aaKnown RBP17.59■□□□□ 0.41
VPS53-210ENST00000571456 PSORS1C1Q9UIG5 152 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 TPRKBQ9Y3C4 175 aa17.59■□□□□ 0.41
VPS53-210ENST00000571456 IQCF6A8MYZ5 107 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 LOC110117498-PIK3R3F6TDL0 507 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 TBX1O43435 398 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 DENRO43583 198 aaKnown RBP17.58■□□□□ 0.4
VPS53-210ENST00000571456 TIMM8AO60220 97 aaPredicted RBP17.58■□□□□ 0.4
VPS53-210ENST00000571456 FAM20BO75063 409 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 CLPTM1O96005 669 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 ATP6V1B1P15313 513 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 PTH2RP49190 550 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 SNAI3Q3KNW1 292 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 LIPNQ5VXI9 398 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 RFLNBQ8N5W9 214 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 CCDC54Q8NEL0 328 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 ALG8Q9BVK2 526 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 MYOZ1Q9NP98 299 aaPredicted RBP17.58■□□□□ 0.4
VPS53-210ENST00000571456 BLOC1S6Q9UL45 172 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 FZR1Q9UM11 496 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 MYRFQ9Y2G1 1151 aa17.58■□□□□ 0.4
VPS53-210ENST00000571456 PRR32B1ATL7 298 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 SLC2A1P11166 492 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 MPV17P39210 176 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 MMP15P51511 669 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 GLYATL3Q5SZD4 288 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 FDX2Q6P4F2 183 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 TMPRSS11AQ6ZMR5 421 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 SSX6Q7RTT6 188 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 LRP11Q86VZ4 500 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 BPIFB6Q8NFQ5 453 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 GGHQ92820 318 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 MYDGFQ969H8 173 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 GNG8Q9UK08 70 aa17.57■□□□□ 0.4
VPS53-210ENST00000571456 CAB39Q9Y376 341 aaPredicted RBP17.57■□□□□ 0.4
VPS53-210ENST00000571456 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.56■□□□□ 0.4
VPS53-210ENST00000571456 C17orf100A8MU93 164 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 PSMD9O00233 223 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 SLC1A7O00341 560 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 SRSF10O75494 262 aaKnown RBP17.56■□□□□ 0.4
VPS53-210ENST00000571456 EFNA4P52798 201 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 ATP5J2P56134 94 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 ST3GAL4Q11206 333 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 BCL2L15Q5TBC7 163 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 RNLSQ5VYX0 342 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 KLBQ86Z14 1044 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 STX19Q8N4C7 294 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 ZNF540Q8NDQ6 660 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 CSNK2A3Q8NEV1 391 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 OR8G5Q8NG78 346 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 OR13G1Q8NGZ3 307 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 SGK3Q96BR1 496 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 PERPQ96FX8 193 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 REEP6Q96HR9 211 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 SIGLEC11Q96RL6 698 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 PBOV1Q9GZY1 135 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 POFUT1Q9H488 388 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 FKBP14Q9NWM8 211 aa17.56■□□□□ 0.4
VPS53-210ENST00000571456 LOC390937A0A1W2PQ73 354 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 GGT3PA6NGU5 568 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms