RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SPATS1Q496A3 300 aa12.38□□□□□ -0.43
CLN3-236ENST00000568558 ZNF362Q5T0B9 420 aaPredicted RBP12.38□□□□□ -0.43
CLN3-236ENST00000568558 SLC35F1Q5T1Q4 408 aa12.38□□□□□ -0.43
CLN3-236ENST00000568558 TMEM86BQ8N661 226 aa12.38□□□□□ -0.43
CLN3-236ENST00000568558 BOLLQ8N9W6 283 aaKnown RBP12.38□□□□□ -0.43
CLN3-236ENST00000568558 PLPP7Q8NBV4 271 aa12.38□□□□□ -0.43
CLN3-236ENST00000568558 OR4F5Q8NH21 305 aa12.38□□□□□ -0.43
CLN3-236ENST00000568558 FAM71F1Q96KD3 344 aaPredicted RBP12.38□□□□□ -0.43
CLN3-236ENST00000568558 CHIAQ9BZP6 476 aa12.38□□□□□ -0.43
CLN3-236ENST00000568558 SMURF1Q9HCE7 757 aa12.38□□□□□ -0.43
CLN3-236ENST00000568558 WNK1Q9H4A3 2382 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 CENPVL3A0A0U1RRI6 287 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 C3orf80F5H4A9 247 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 ADAM20O43506 726 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 TOX4O94842 621 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 NDUFA7O95182 113 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 CRYBA1P05813 215 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 LIPFP07098 398 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 PSKH1P11801 424 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 ZNF823P16415 610 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 RRM2P31350 389 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 PYCR1P32322 319 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 IFNGR2P38484 337 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 RELBQ01201 579 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 SRSF4Q08170 494 aaKnown RBP12.37□□□□□ -0.43
CLN3-236ENST00000568558 TSPAN31Q12999 210 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 GLYATL3Q5SZD4 288 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 DRAM2Q6UX65 266 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 KIR3DL3Q8N743 410 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 GNPDA2Q8TDQ7 276 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 ZNRF4Q8WWF5 429 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 WDFY2Q96P53 400 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 DDOQ99489 341 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 BEX1Q9HBH7 125 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 TRIM36Q9NQ86 728 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 C1RLQ9NZP8 487 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 MRPL15Q9P015 296 aaKnown RBP12.37□□□□□ -0.43
CLN3-236ENST00000568558 KIF17Q9P2E2 1029 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 POMT1Q9Y6A1 747 aa12.37□□□□□ -0.43
CLN3-236ENST00000568558 TRAV38-1A0A0B4J264 116 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 TCRBV5S2A0A599 114 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 C5orf63A6NC05 138 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 OOEPA6NGQ2 149 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 GGT3PA6NGU5 568 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 TVP23AA6NH52 213 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 NDUFA2O43678 99 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 FABP3P05413 133 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 OR8B8Q15620 311 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 OCLNQ16625 522 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 OLFML2AQ68BL7 652 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 PGBD2Q6P3X8 592 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 LYPD4Q6UWN0 246 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 C17orf107Q6ZR85 190 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 GCSAMQ8N6F7 178 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 PNLDC1Q8NA58 520 aaKnown RBP12.36□□□□□ -0.43
CLN3-236ENST00000568558 CYB561A3Q8NBI2 242 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 PROKR2Q8NFJ6 384 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 GATAD2BQ8WXI9 593 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 MCUR1Q96AQ8 359 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 SIRPDQ9H106 197 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 EGLN3Q9H6Z9 239 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 ACOXLQ9NUZ1 547 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 C1orf123Q9NWV4 160 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 ACTR3BQ9P1U1 418 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 CDH10Q9Y6N8 788 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 COMMD3-BMI1R4GMX3 469 aa12.36□□□□□ -0.43
CLN3-236ENST00000568558 BHLHE40O14503 412 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 FCN3O75636 299 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 GYPAP02724 150 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 PDCD1Q15116 288 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 METTL11BQ5VVY1 283 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 LCN8Q6JVE9 175 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 RPL13AP3Q6NVV1 102 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 ZNF826PQ6ZT77 177 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 DCXRQ7Z4W1 244 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 FAM90A1Q86YD7 464 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 ZDHHC21Q8IVQ6 265 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 ARHGAP24Q8N264 748 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 SPERTQ8NA61 448 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 OR52L1Q8NGH7 329 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 OR56B2PQ8NGI1 322 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 OR4C15Q8NGM1 316 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 OR2T4Q8NH00 348 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 SSMEM1Q8WWF3 244 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 CCDC124Q96CT7 223 aaKnown RBP12.35□□□□□ -0.43
CLN3-236ENST00000568558 SLC7A6OSQ96CW6 309 aaPredicted RBP12.35□□□□□ -0.43
CLN3-236ENST00000568558 CITED1Q99966 193 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 THTPAQ9BU02 230 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 C1orf21Q9H246 121 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 RASSF4Q9H2L5 321 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 IL1RAPQ9NPH3 570 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 PDP1Q9P0J1 537 aaPredicted RBP12.35□□□□□ -0.43
CLN3-236ENST00000568558 PRPF19Q9UMS4 504 aaKnown RBP12.35□□□□□ -0.43
CLN3-236ENST00000568558 NOTCH1P46531 2555 aa12.35□□□□□ -0.43
CLN3-236ENST00000568558 IGHV1-69DA0A0B4J2H0 117 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 CLPSL1A2RUU4 121 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 A6NLC8 198 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 IGHV1-69P01742 117 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 GRPP07492 148 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 SLC2A1P11166 492 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms