RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MOGAT3Q86VF5 341 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 GLCCI1Q86VQ1 547 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 LRRC28Q86X40 367 aaPredicted RBP12.65□□□□□ -0.38
VPS39-210ENST00000568357 TCEANCQ8N8B7 351 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 OR51F2Q8NH61 342 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 GAL3ST1Q99999 423 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 OSBPL10Q9BXB5 764 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 UBAP1Q9NZ09 502 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 XRCC2O43543 280 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 ZNF205O95201 554 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 CYB5R3P00387 301 aaPredicted RBP12.64□□□□□ -0.39
VPS39-210ENST00000568357 MRPL3P09001 348 aaKnown RBP12.64□□□□□ -0.39
VPS39-210ENST00000568357 ANPEPP15144 967 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 BTG1P62324 171 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 FAM3AP98173 230 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 AADACL4Q5VUY2 407 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 LRRN1Q6UXK5 716 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 MEPCEQ7L2J0 689 aaKnown RBP12.64□□□□□ -0.39
VPS39-210ENST00000568357 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.64□□□□□ -0.39
VPS39-210ENST00000568357 OR56B2PQ8NGI1 322 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 RAB39BQ96DA2 213 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 IL4I1Q96RQ9 567 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 BRD7Q9NPI1 651 aa12.64□□□□□ -0.39
VPS39-210ENST00000568357 PRR32B1ATL7 298 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 APOC1P02654 83 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 SRD5A1P18405 259 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 CD200P41217 278 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 GATA4P43694 442 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 RAD23AP54725 363 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 OR8G1Q15617 311 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 MPPED2Q15777 294 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 FAM201AQ5SY85 155 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 PRAMEF6Q5VXH4 476 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 FAHD2BQ6P2I3 314 aaPredicted RBP12.63□□□□□ -0.39
VPS39-210ENST00000568357 CELF2-AS1Q8N7Q2 184 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 OR52H1Q8NGJ2 320 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 TMEM163Q8TC26 289 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 DVL3Q92997 716 aaPredicted RBP12.63□□□□□ -0.39
VPS39-210ENST00000568357 FAHD2AQ96GK7 314 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 REEP6Q96HR9 211 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 YIPF3Q9GZM5 350 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 SLC22A4Q9H015 551 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 SP140LQ9H930 580 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 TMEM165Q9HC07 324 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 MRPL15Q9P015 296 aaKnown RBP12.63□□□□□ -0.39
VPS39-210ENST00000568357 LAMP5Q9UJQ1 280 aa12.63□□□□□ -0.39
VPS39-210ENST00000568357 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.62□□□□□ -0.392e-6■■■□□ 18.9
VPS39-210ENST00000568357 TRAV20A0A0B4J274 112 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 IFNL4K9M1U5 179 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 PSMD9O00233 223 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 GMDSO60547 372 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 HNF1AP20823 631 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 ZFP36P26651 326 aaKnown RBP12.62□□□□□ -0.39
VPS39-210ENST00000568357 TIGD6Q17RP2 521 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 ZNF181Q2M3W8 571 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 TMEM155Q4W5P6 130 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 LCN1P1Q5VSP4 162 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 NXNL2Q5VZ03 156 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 KLHL36Q8N4N3 616 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 PGAM5Q96HS1 289 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 GABARAPL3Q9BY60 117 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 PRRG3Q9BZD7 231 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 OR10A2Q9H208 303 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 RIBC2Q9H4K1 309 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 OPA3Q9H6K4 179 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 PPP1R3EQ9H7J1 279 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 G6PC2Q9NQR9 355 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 UFSP2Q9NUQ7 469 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 H2AFY2Q9P0M6 372 aaPredicted RBP12.62□□□□□ -0.39
VPS39-210ENST00000568357 ENOPH1Q9UHY7 261 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 PCDHB10Q9UN67 800 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 COPS3Q9UNS2 423 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 LRP12Q9Y561 859 aa12.62□□□□□ -0.39
VPS39-210ENST00000568357 hCG_38984A0A1B0GV85 526 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 PTBP3O95758 552 aaKnown RBP12.61□□□□□ -0.39
VPS39-210ENST00000568357 AVPP01185 164 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 PCMT1P22061 227 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 DDOSTP39656 456 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 MDH2P40926 338 aaKnown RBP12.61□□□□□ -0.39
VPS39-210ENST00000568357 GSK3AP49840 483 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 SEC61A1P61619 476 aaKnown RBP12.61□□□□□ -0.39
VPS39-210ENST00000568357 LCN2P80188 198 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 HOXA4Q00056 320 aaPredicted RBP12.61□□□□□ -0.39
VPS39-210ENST00000568357 GFOD2Q3B7J2 385 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 ZFP1Q6P2D0 407 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 C1orf229Q6ZS94 237 aaPredicted RBP12.61□□□□□ -0.39
VPS39-210ENST00000568357 KRT77Q7Z794 578 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 SPICQ8N5J4 248 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 RFLNBQ8N5W9 214 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 Q8TCH9 128 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 RBM4BQ9BQ04 359 aaKnown RBP12.61□□□□□ -0.39
VPS39-210ENST00000568357 ADAT1Q9BUB4 502 aaKnown RBP12.61□□□□□ -0.39
VPS39-210ENST00000568357 PATZ1Q9HBE1 687 aaKnown RBP12.61□□□□□ -0.39
VPS39-210ENST00000568357 ADGRL4Q9HBW9 690 aa12.61□□□□□ -0.39
VPS39-210ENST00000568357 DYSFO75923 2080 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 SLC22A31A6NKX4 558 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 LRRC30A6NM36 301 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 FAM20BO75063 409 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 ALPLP05186 524 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 PSMA6P60900 246 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms