RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ACTR3BQ9P1U1 418 aa15.57■□□□□ 0.08
CLN3-218ENST00000565688 SOX21Q9Y651 276 aaPredicted RBP15.57■□□□□ 0.08
CLN3-218ENST00000565688 SRRM5B3KS81 715 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 ZNF879B4DU55 563 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 P2RY10O00398 339 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 HOXA3O43365 443 aaPredicted RBP15.56■□□□□ 0.08
CLN3-218ENST00000565688 XRCC2O43543 280 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 DCTN3O75935 186 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 CCNB2O95067 398 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 GASTP01350 101 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 SPARCP09486 303 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 DDOSTP39656 456 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 MAGEA2P43356 314 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 MNAT1P51948 309 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 BLVRAP53004 296 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 SLC25A1P53007 311 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 DEFB112Q30KQ8 113 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 C11orf91Q3C1V1 193 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 SFRP4Q6FHJ7 346 aaPredicted RBP15.56■□□□□ 0.08
CLN3-218ENST00000565688 SPATC1Q76KD6 591 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 BOLLQ8N9W6 283 aaKnown RBP15.56■□□□□ 0.08
CLN3-218ENST00000565688 PNLDC1Q8NA58 520 aaKnown RBP15.56■□□□□ 0.08
CLN3-218ENST00000565688 OR8D4Q8NGM9 314 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 OR9Q1Q8NGQ5 310 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 ZNRF4Q8WWF5 429 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 TSSK6Q9BXA6 273 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 SLITRK2Q9H156 845 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 CENPMQ9NSP4 180 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 ARL2BPQ9Y2Y0 163 aa15.56■□□□□ 0.08
CLN3-218ENST00000565688 MDFIC2A0A1B0GVS7 189 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 OOEPA6NGQ2 149 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 ZNF878C9JN71 531 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 C3orf80F5H4A9 247 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 ZNF593O00488 134 aaPredicted RBP15.55■□□□□ 0.08
CLN3-218ENST00000565688 ADAM20O43506 726 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 WIPF1O43516 503 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 IFNGP01579 166 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 CFHR2P36980 270 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 SLC15A1P46059 708 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 PRKXP51817 358 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 GRB2P62993 217 aaKnown RBP15.55■□□□□ 0.08
CLN3-218ENST00000565688 LYPD4Q6UWN0 246 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 CYP2R1Q6VVX0 501 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 AQP11Q8NBQ7 271 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 OR2T33Q8NG76 320 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 OR56B2PQ8NGI1 322 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 SPSB4Q96A44 273 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 TMIGD2Q96BF3 282 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 PCGF1Q9BSM1 259 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 NMNAT2Q9BZQ4 307 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 SP140LQ9H930 580 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 C1orf123Q9NWV4 160 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 CTSZQ9UBR2 303 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 MMP24Q9Y5R2 645 aa15.55■□□□□ 0.08
CLN3-218ENST00000565688 A0A1B0GUS0 222 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 A6NLC8 198 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 ANKRD30BLA7E2S9 258 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 TNFRSF13BO14836 293 aaPredicted RBP15.54■□□□□ 0.08
CLN3-218ENST00000565688 TOX4O94842 621 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 GRPP07492 148 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 PSKH1P11801 424 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 SPI1P17947 270 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 CRMP1Q14194 572 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 METTL11BQ5VVY1 283 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 TMEM86BQ8N661 226 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 ZNF511Q8NB15 262 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 OR6K6Q8NGW6 343 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 FAM71F1Q96KD3 344 aaPredicted RBP15.54■□□□□ 0.08
CLN3-218ENST00000565688 TOR3AQ9H497 397 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 MAGIXQ9H6Y5 334 aa15.54■□□□□ 0.08
CLN3-218ENST00000565688 hCG_1807616A0A1W2PRN6 198 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 C5orf63A6NC05 138 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 RIIAD1A6NNX1 92 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 ECDO95905 644 aaPredicted RBP15.53■□□□□ 0.08
CLN3-218ENST00000565688 APOC1P02654 83 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 CRYBA1P05813 215 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 GYPBP06028 91 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 SFTPBP07988 381 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 SLC2A1P11166 492 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 GRK5P34947 590 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 HOXA4Q00056 320 aaPredicted RBP15.53■□□□□ 0.08
CLN3-218ENST00000565688 PDCD1Q15116 288 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 MICAQ29983 383 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 Q6YL49 198 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 ARHGAP24Q8N264 748 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 OR8S1Q8NH09 359 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 GATAD2BQ8WXI9 593 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 WDFY2Q96P53 400 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 DGCR6LQ9BY27 220 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 MUC13Q9H3R2 512 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 REEP1Q9H902 201 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 N6AMT1Q9Y5N5 214 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 TRRAPQ9Y4A5 3859 aa15.53■□□□□ 0.08
CLN3-218ENST00000565688 DHRS12A0PJE2 317 aa15.52■□□□□ 0.08
CLN3-218ENST00000565688 LHBP01229 141 aa15.52■□□□□ 0.08
CLN3-218ENST00000565688 GYPAP02724 150 aa15.52■□□□□ 0.08
CLN3-218ENST00000565688 MMP9P14780 707 aa15.52■□□□□ 0.08
CLN3-218ENST00000565688 ZNF3P17036 446 aa15.52■□□□□ 0.08
CLN3-218ENST00000565688 ATP6V1B2P21281 511 aa15.52■□□□□ 0.08
CLN3-218ENST00000565688 MDKP21741 143 aaPredicted RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms