RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 FAM3AP98173 230 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 GINS1Q14691 196 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 LYPD2Q6UXB3 125 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 C11orf53Q8IXP5 236 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 TEX47Q8TBZ9 253 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 FAM216AQ8WUB2 273 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 INTS14Q96SY0 518 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 SSBP3Q9BWW4 388 aaPredicted RBP12.41□□□□□ -0.42
CLN3-213ENST00000565047 MIOXQ9UGB7 285 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 AUP1Q9Y679 476 aa12.41□□□□□ -0.42
CLN3-213ENST00000565047 KIR2DS1A0A191URI9 304 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 LRRC30A6NM36 301 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 H3BN98 237 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 GYG2O15488 501 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 FKBP6O75344 327 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 FCN3O75636 299 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 LHBP01229 141 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 PPIAL4GP0DN37 164 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 SLC2A5P22732 501 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 GRB2P62993 217 aaKnown RBP12.4□□□□□ -0.42
CLN3-213ENST00000565047 EIF2B1Q14232 305 aaKnown RBP12.4□□□□□ -0.42
CLN3-213ENST00000565047 OR8G1Q15617 311 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 DNAL1Q4LDG9 190 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 ESCO2Q56NI9 601 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 SPATC1Q76KD6 591 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 WDR86Q86TI4 376 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 C1orf87Q8N0U7 546 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 C19orf18Q8NEA5 215 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 OR56B2PQ8NGI1 322 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 C22orf15Q8WYQ4 148 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 UTP4Q969X6 686 aaKnown RBP12.4□□□□□ -0.42
CLN3-213ENST00000565047 NEIL1Q96FI4 390 aaPredicted RBP12.4□□□□□ -0.42
CLN3-213ENST00000565047 SUCNR1Q9BXA5 334 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 CADM1Q9BY67 442 aaKnown RBP12.4□□□□□ -0.42
CLN3-213ENST00000565047 TOR3AQ9H497 397 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 OPA3Q9H6K4 179 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 PPP1R3EQ9H7J1 279 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 CTSZQ9UBR2 303 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 DNAJB9Q9UBS3 223 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 ZNF69Q9UC07 566 aa12.4□□□□□ -0.42
CLN3-213ENST00000565047 IGHV2-70DA0A0C4DH43 119 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 hCG_38984A0A1B0GV85 526 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 TMEM89A2RUT3 159 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 GGT3PA6NGU5 568 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 GSC2O15499 205 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 XRCC2O43543 280 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 DNAJC8O75937 253 aaPredicted RBP12.39□□□□□ -0.43
CLN3-213ENST00000565047 RPS2P15880 293 aaKnown RBP12.39□□□□□ -0.43
CLN3-213ENST00000565047 DDOSTP39656 456 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 SLC15A1P46059 708 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 CX3CR1P49238 355 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 CBX1P83916 185 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 BNIP1Q12981 228 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 FLOT2Q14254 428 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 WDR25Q64LD2 544 aaPredicted RBP12.39□□□□□ -0.43
CLN3-213ENST00000565047 PLBD1Q6P4A8 553 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 DCDC5Q6ZRR9 648 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 DOK3Q7L591 496 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 SLC16A9Q7RTY1 509 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 ERI1Q8IV48 349 aaKnown RBP12.39□□□□□ -0.43
CLN3-213ENST00000565047 BCL6BQ8N143 479 aaPredicted RBP12.39□□□□□ -0.43
CLN3-213ENST00000565047 GCSAMQ8N6F7 178 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 OR6N2Q8NGY6 317 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 OTOSQ8NHW6 89 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 RAB40AQ8WXH6 277 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 C1orf147Q96MC9 270 aaPredicted RBP12.39□□□□□ -0.43
CLN3-213ENST00000565047 ZNF48Q96MX3 618 aaPredicted RBP12.39□□□□□ -0.43
CLN3-213ENST00000565047 ADAT1Q9BUB4 502 aaKnown RBP12.39□□□□□ -0.43
CLN3-213ENST00000565047 SLC25A19Q9HC21 320 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 UFSP2Q9NUQ7 469 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 RNF7Q9UBF6 113 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 NUP50Q9UKX7 468 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 KLHDC2Q9Y2U9 406 aa12.39□□□□□ -0.43
CLN3-213ENST00000565047 SELENOFO60613 162 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 ANXA8P13928 327 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 POU1F1P28069 291 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 ZNF121P58317 390 aaPredicted RBP12.38□□□□□ -0.43
CLN3-213ENST00000565047 EFNB1P98172 346 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 TMEM236Q5W0B7 351 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 FAHD1Q6P587 224 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 ZNF826PQ6ZT77 177 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 C9orf139Q6ZV77 190 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 SHFQ7M4L6 423 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 KRT74Q7RTS7 529 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 SPATA24Q86W54 205 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 CPOQ8IVL8 374 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 SPERTQ8NA61 448 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 BBS1Q8NFJ9 593 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 UPRTQ96BW1 309 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 ZMYND19Q96E35 227 aaPredicted RBP12.38□□□□□ -0.43
CLN3-213ENST00000565047 NRBF2Q96F24 287 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 OR51V1Q9H2C8 321 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 FN3KRPQ9HA64 309 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 OR5V1Q9UGF6 321 aa12.38□□□□□ -0.43
CLN3-213ENST00000565047 NOP16Q9Y3C1 178 aaKnown RBP12.38□□□□□ -0.43
CLN3-213ENST00000565047 C22orf46C9J442 243 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 PRR23D1E9PI22 279 aaPredicted RBP12.37□□□□□ -0.43
CLN3-213ENST00000565047 LGALS8O00214 317 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 GNGT2O14610 69 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 PRODHO43272 600 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms