RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SIGLECL1Q8N7X8 197 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 OR56B2PQ8NGI1 322 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 OR11L1Q8NGX0 322 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 TEX47Q8TBZ9 253 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 CANT1Q8WVQ1 401 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 ERGIC1Q969X5 290 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 C1orf147Q96MC9 270 aaPredicted RBP9.03□□□□□ -0.96
VPS39-208ENST00000564994 ZNF48Q96MX3 618 aaPredicted RBP9.03□□□□□ -0.96
VPS39-208ENST00000564994 ADAT1Q9BUB4 502 aaKnown RBP9.03□□□□□ -0.96
VPS39-208ENST00000564994 ABHD6Q9BV23 337 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 SLC22A4Q9H015 551 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 MARCH7Q9H992 704 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 MRPL15Q9P015 296 aaKnown RBP9.03□□□□□ -0.96
VPS39-208ENST00000564994 SOX21Q9Y651 276 aaPredicted RBP9.03□□□□□ -0.96
VPS39-208ENST00000564994 PKD1L1Q8TDX9 2849 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 IGHV3OR16-10A0A075B7F0 116 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 ARRDC5A6NEK1 342 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 AQP12BA6NM10 295 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 H3BN98 237 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 TNFRSF13BO14836 293 aaPredicted RBP9.02□□□□□ -0.97
VPS39-208ENST00000564994 GMDSO60547 372 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 IRF2P14316 349 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 GSTT1P30711 240 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 PSMB10P40306 273 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 PITPNBP48739 271 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 CX3CR1P49238 355 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 BLVRAP53004 296 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 FAM3AP98173 230 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 EIF2B1Q14232 305 aaKnown RBP9.02□□□□□ -0.97
VPS39-208ENST00000564994 GK3PQ14409 553 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 TAF13Q15543 124 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 WDR25Q64LD2 544 aaPredicted RBP9.02□□□□□ -0.97
VPS39-208ENST00000564994 SFRP4Q6FHJ7 346 aaPredicted RBP9.02□□□□□ -0.97
VPS39-208ENST00000564994 DCDC5Q6ZRR9 648 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 ZNF826PQ6ZT77 177 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 DOK3Q7L591 496 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 ERI1Q8IV48 349 aaKnown RBP9.02□□□□□ -0.97
VPS39-208ENST00000564994 AQP12AQ8IXF9 295 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 TIGD4Q8IY51 512 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 OR8B3Q8NGG8 313 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 OR6N2Q8NGY6 317 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 RNF133Q8WVZ7 376 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 RAB40AQ8WXH6 277 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 GCDHQ92947 438 aaPredicted RBP9.02□□□□□ -0.97
VPS39-208ENST00000564994 SPSB4Q96A44 273 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 OTULINQ96BN8 352 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 SGK3Q96BR1 496 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 PLEKHA8Q96JA3 519 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 OR8B2Q96RD0 313 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 INTS14Q96SY0 518 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 PPP1R3EQ9H7J1 279 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 FN3KRPQ9HA64 309 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 NTN4Q9HB63 628 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 PDP1Q9P0J1 537 aaPredicted RBP9.02□□□□□ -0.97
VPS39-208ENST00000564994 ZNF319Q9P2F9 582 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 RNF7Q9UBF6 113 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 CTSZQ9UBR2 303 aa9.02□□□□□ -0.97
VPS39-208ENST00000564994 MGAM2Q2M2H8 2515 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 KIR2DS1A0A191URI9 304 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 C22orf46C9J442 243 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 TBX1O43435 398 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 XRCC2O43543 280 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 FCN3O75636 299 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 GLCEO94923 617 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 ANXA2P07355 339 aaKnown RBP9.01□□□□□ -0.97
VPS39-208ENST00000564994 GRPP07492 148 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 PPIAL4GP0DN37 164 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 PRKACGP22612 351 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 POU1F1P28069 291 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 OPRL1P41146 370 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 ZNF121P58317 390 aaPredicted RBP9.01□□□□□ -0.97
VPS39-208ENST00000564994 GRB2P62993 217 aaKnown RBP9.01□□□□□ -0.97
VPS39-208ENST00000564994 GINS1Q14691 196 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 KLHL12Q53G59 568 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 PLBD1Q6P4A8 553 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 BTNL3Q6UXE8 466 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 LRRN1Q6UXK5 716 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 FAM57BQ71RH2 274 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 NLRC3Q7RTR2 1065 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 SLC16A9Q7RTY1 509 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 TRPM8Q7Z2W7 1104 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 WDR86Q86TI4 376 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 PARP8Q8N3A8 854 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 GCSAMQ8N6F7 178 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 BOLLQ8N9W6 283 aaKnown RBP9.01□□□□□ -0.97
VPS39-208ENST00000564994 PLPP7Q8NBV4 271 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 UPRTQ96BW1 309 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 SLC7A6OSQ96CW6 309 aaPredicted RBP9.01□□□□□ -0.97
VPS39-208ENST00000564994 DUX5Q96PT3 197 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 NUDT16L1Q9BRJ7 211 aaKnown RBP9.01□□□□□ -0.97
VPS39-208ENST00000564994 OR51V1Q9H2C8 321 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 TOR3AQ9H497 397 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 OPA3Q9H6K4 179 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 C1orf123Q9NWV4 160 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 FAM53CQ9NYF3 392 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 DNAJC27Q9NZQ0 273 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 CLN8Q9UBY8 286 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 NOP16Q9Y3C1 178 aaKnown RBP9.01□□□□□ -0.97
VPS39-208ENST00000564994 TRRAPQ9Y4A5 3859 aa9.01□□□□□ -0.97
VPS39-208ENST00000564994 TRAV40A0A0B4J280 105 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms