RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, human

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB40C-208	ENST00000564703	WBP4	O75554	376 aa	Known RBP	13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	SLC25A16	P16260	332 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	HSPA13	P48723	471 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	HFE	Q30201	348 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	TMEM255A	Q5JRV8	349 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	SSX6	Q7RTT6	188 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	THAP5	Q7Z6K1	395 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	FTMT	Q8N4E7	242 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	RFLNB	Q8N5W9	214 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	APH1B	Q8WW43	257 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	GTF3A	Q92664	365 aa	Known RBP	13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	ITFG2	Q969R8	447 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	SIGLEC11	Q96RL6	698 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	SLC30A2	Q9BRI3	323 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	PBOV1	Q9GZY1	135 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	INPP5E	Q9NRR6	644 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	MRPS18A	Q9NVS2	196 aa	Known RBP	13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	FAM206A	Q9NX38	181 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	MRM2	Q9UI43	246 aa	Known RBP	13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	SNX5	Q9Y5X3	404 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703		R4GMQ9	66 aa		13.6	□□□□□ -0.23
RAB40C-208	ENST00000564703	IGHV1-69-2	A0A0G2JMI3	117 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	C5orf63	A6NC05	138 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	TRIM64	A6NGJ6	449 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	TRIM64B	A6NI03	449 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	PRR32	B1ATL7	298 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	GMDS	O60547	372 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	CDC14B	O60729	498 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	CD55	P08174	381 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	ACHE	P22303	614 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	COL8A2	P25067	703 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	CRYBB2	P43320	205 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	SRP9	P49458	86 aa	Known RBP	13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	GSK3A	P49840	483 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	AQP4	P55087	323 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	PRSS12	P56730	875 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	TMEM33	P57088	247 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	ACTA2	P62736	377 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	ACTG2	P63267	376 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	FAM3A	P98173	230 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF85	Q03923	595 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	MZT1	Q08AG7	82 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	MED21	Q13503	144 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	OR8G1	Q15617	311 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	SMN1	Q16637	294 aa	Known RBP	13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	C6orf52	Q5T4I8	152 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	BCL2L15	Q5TBC7	163 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	LIPN	Q5VXI9	398 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703		Q6ZR03	302 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	LHFPL3	Q86UP9	236 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	CSNK2A3	Q8NEV1	391 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	OR8B12	Q8NGG6	310 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	C10orf105	Q8TEF2	133 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	REG4	Q9BYZ8	158 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	MOB1A	Q9H8S9	216 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	CHODL	Q9H9P2	273 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	CHCHD3	Q9NX63	227 aa	Known RBP	13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	MRPL15	Q9P015	296 aa	Known RBP	13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF319	Q9P2F9	582 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	IL19	Q9UHD0	177 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	OR52A1	Q9UKL2	312 aa		13.59	□□□□□ -0.23
RAB40C-208	ENST00000564703	ITPR3	Q14573	2671 aa		13.58	□□□□□ -0.23
RAB40C-208	ENST00000564703	MAP1A	P78559	2803 aa	Predicted RBP	13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703		A0A0U1RQV5	110 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	RNF223	E7ERA6	249 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	LYNX1	G3V0Z9	82 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703		H7C1Q1	480 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703		J3QLW9	94 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	SMAD7	O15105	426 aa	Known RBP	13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	MTRF1	O75570	445 aa	Known RBP	13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	GNAO1	P09471	354 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	LYNX1	P0DP58	116 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	FOSL1	P15407	271 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	ZNF19	P17023	458 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	CA6	P23280	308 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	DCK	P27707	260 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	GNAL	P38405	381 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	MAP2K3	P46734	347 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	CSNK2B	P67870	215 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	SLC3A1	Q07837	685 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	GALE	Q14376	348 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	TP53I3	Q53FA7	332 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	DNM1P46	Q6ZS02	220 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	PEG10	Q86TG7	708 aa	Known RBP	13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	KLB	Q86Z14	1044 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	EGFL6	Q8IUX8	553 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	SPERT	Q8NA61	448 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	OR56B2P	Q8NGI1	322 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	CCL17	Q92583	94 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	C18orf12	Q96KH6	178 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	NUFIP1	Q9UHK0	495 aa	Known RBP	13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	MYRF	Q9Y2G1	1151 aa		13.58	□□□□□ -0.24
RAB40C-208	ENST00000564703	CHD3	Q12873	2000 aa	Known RBP	13.57	□□□□□ -0.24
RAB40C-208	ENST00000564703	IGHV4-30-2	A0A087WSY4	118 aa		13.57	□□□□□ -0.24
RAB40C-208	ENST00000564703		J3QRE1	110 aa		13.57	□□□□□ -0.24
RAB40C-208	ENST00000564703	NCR1	O76036	304 aa		13.57	□□□□□ -0.24
RAB40C-208	ENST00000564703	PNP	P00491	289 aa		13.57	□□□□□ -0.24
RAB40C-208	ENST00000564703	HLA-DPB1	P04440	258 aa		13.57	□□□□□ -0.24
RAB40C-208	ENST00000564703	ATP6V1B1	P15313	513 aa		13.57	□□□□□ -0.24

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